Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.

Arnab Mutsuddy Cemal ErdemJonah R HugginsMisha SalimDaniel CookNicole HobbsF Alex FeltusMarc R Birtwistle

Published in: Bioinformatics advances (2023)

Source code is freely available at https://github.com/birtwistlelab/SPARCED/releases/tag/v1.3.0 implemented in python, and supported on Linux, Windows and MacOS (via Docker).

Keyphrases

single cell
rna seq
molecular dynamics
high throughput
monte carlo