Cemal Erdem

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 7

Top Topics

Hyaluronic Acid

Breast Cancer Cells

Top Venues

Nature communications

PLoS computational biology

Bioinformatics advances

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Arnab Mutsuddy, Jonah R Huggins, Aurore Amrit, Cemal Erdem, Jon C Calhoun, Marc R Birtwistle
Mechanistic modeling of cell viability assays with in silico lineage tracing. bioRxiv : the preprint server for biology (2024)
Cemal Erdem, Sean M Gross, Laura M Heiser, Marc R Birtwistle
MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms. Nature communications 14 (1) (2023)
Arnab Mutsuddy, Cemal Erdem, Jonah R Huggins, Misha Salim, Daniel Cook, Nicole Hobbs, F Alex Feltus, Marc R Birtwistle
Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format. Bioinformatics advances 3 (1) (2023)
Cemal Erdem, Arnab Mutsuddy, Ethan M Bensman, William B Dodd, Michael M Saint-Antoine, Mehdi Bouhaddou, Robert C Blake, Sean M Gross, Laura M Heiser, Frank Alex Feltus, Marc R Birtwistle
A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling. Nature communications 13 (1) (2022)
Cameron O Zadeh, Jonah R Huggins, Deepraj Sarmah, Baylee C Westbury, William R Interiano, Micah C Jordan, S Ashley Phillips, William B Dodd, Wesley O Meredith, Nicholas J Harold, Cemal Erdem, Marc R Birtwistle
Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates. ACS omega 7 (33) (2022)
Sean M Gross, Mark A Dane, Rebecca L Smith, Kaylyn L Devlin, Ian C McLean, Daniel S Derrick, Caitlin E Mills, Kartik Subramanian, Alexandra B London, Denis Torre, John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie, Cemal Erdem, Nicholas Lyons, Ted Natoli, Sarah Pessa, Xiaodong Lu, James Mullahoo, Jonathan Li, Miriam Adam, Brook Wassie, Moqing Liu, David F Kilburn, Tiera A Liby, Elmar Bucher, Crystal Sanchez-Aguila, Kenneth Daily, Larsson Omberg, Yunguan Wang, Connor Jacobson, Clarence Yapp, Mirra Chung, Dusica Vidovic, Yiling Lu, Stephan C Schürer, Albert Lee, Ajay Pillai, Aravind Subramanian, Malvina Papanastasiou, Ernest Fraenkel, Heidi S Feiler, Gordon B Mills, Jacob D Jaffe, Avi Ma'ayan, Marc R Birtwistle, Peter Karl Sorger, James E Korkola, Joe W Gray, Laura M Heiser
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses. Communications biology 5 (1) (2022)
Cemal Erdem, Adrian V Lee, D Lansing Taylor, Timothy R Lezon
Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells. PLoS computational biology 17 (6) (2021)