Drug genetic associations with COVID-19 manifestations: a data mining and network biology approach.
Theodosia CharitouPanagiota I KontouIoannis A TamposisGeorgios A PavlopoulosGeorgia G BraliouPantelis G BagosPublished in: The pharmacogenomics journal (2022)
Available drugs have been used as an urgent attempt through clinical trials to minimize severe cases of hospitalizations with Coronavirus disease (COVID-19), however, there are limited data on common pharmacogenomics affecting concomitant medications response in patients with comorbidities. To identify the genomic determinants that influence COVID-19 susceptibility, we use a computational, statistical, and network biology approach to analyze relationships of ineffective concomitant medication with an adverse effect on patients. We statistically construct a pharmacogenetic/biomarker network with significant drug-gene interactions originating from gene-disease associations. Investigation of the predicted pharmacogenes encompassing the gene-disease-gene pharmacogenomics (PGx) network suggests that these genes could play a significant role in COVID-19 clinical manifestation due to their association with autoimmune, metabolic, neurological, cardiovascular, and degenerative disorders, some of which have been reported to be crucial comorbidities in a COVID-19 patient.
Keyphrases
- coronavirus disease
- sars cov
- genome wide
- copy number
- genome wide identification
- respiratory syndrome coronavirus
- adverse drug
- end stage renal disease
- chronic kidney disease
- ejection fraction
- electronic health record
- newly diagnosed
- case report
- genome wide analysis
- machine learning
- multiple sclerosis
- randomized controlled trial
- prognostic factors
- brain injury
- transcription factor
- artificial intelligence
- subarachnoid hemorrhage
- deep learning
- open label