[Expirience introduction of quantitative analysis of chimerism after allogenic stem cell transplantation by real-time PCR with InDel polymorphism.]
Valery V CheranevLoginova MariaSvetlana DruzhininaDaria SmirnovaN A ZorinaN V MinaevaIgor ParamonovPublished in: Klinicheskaia laboratornaia diagnostika (2020)
Using data obtained from domestic and foreign sources, we formed a set of primers and fluorogenic probes for analyzing twentysix specific sequence polymorphisms and one reference gene. In the course of evaluating the effectiveness of real-time PCR, using the example of one of the markers (S01a), we obtained the optimal amount of DNA per reaction (70 ng), providing a resolution of at least 0.1% of the method with the ability to estimate linear chimerism. Formed panel of primers for genetic polymorphisms - InDel has a high degree of informational content for donor-recipient pairs of Russia. From January 2018 to June 2019, a quantitative assessment of the level of linear (CD3 +, CD34 +) and general chimerism was carried out for 28 patients of the clinic of the Institution. Finally, we analyzed patients who received allografts and present 4 different clinical situations that illustrate the informativity level of this method.
Keyphrases
- real time pcr
- stem cell transplantation
- allogeneic hematopoietic stem cell transplantation
- end stage renal disease
- single molecule
- high dose
- newly diagnosed
- randomized controlled trial
- ejection fraction
- chronic kidney disease
- systematic review
- primary care
- small molecule
- peritoneal dialysis
- prognostic factors
- cell free
- drinking water
- circulating tumor
- acute myeloid leukemia
- electronic health record
- copy number
- machine learning
- acute lymphoblastic leukemia
- high resolution
- transcription factor
- nucleic acid
- dna methylation
- living cells
- amino acid
- circulating tumor cells