Global fitting for high-accuracy multi-channel single-molecule localization.
Yiming LiWei ShiSheng LiuIvana ČavkaYu-Le WuUlf MattiDecheng WuSimone KöhlerJonas RiesPublished in: Nature communications (2022)
Multi-channel detection in single-molecule localization microscopy greatly increases information content for various biological applications. Here, we present globLoc, a graphics processing unit based global fitting algorithm with flexible PSF modeling and parameter sharing, to extract maximum information from multi-channel single molecule data. As signals in multi-channel data are highly correlated, globLoc links parameters such as 3D coordinates or photon counts across channels, improving localization precision and robustness. We show, both in simulations and experiments, that global fitting can substantially improve the 3D localization precision for biplane and 4Pi single-molecule localization microscopy and color assignment for ratiometric multicolor imaging.
Keyphrases
- single molecule
- living cells
- atomic force microscopy
- health information
- electronic health record
- high resolution
- healthcare
- big data
- machine learning
- oxidative stress
- deep learning
- quantum dots
- mass spectrometry
- loop mediated isothermal amplification
- peripheral blood
- artificial intelligence
- high throughput
- data analysis
- flow cytometry
- monte carlo
- real time pcr