Jonas Ries

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 69

Top Topics

Convolutional Neural Network

Saccharomyces Cerevisiae

Top Venues

The Journal of cell biology

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization. Nature methods 21 (6) (2024)
Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization. Nature methods 21 (6) (2024)
Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization. Nature methods 21 (6) (2024)
Rory M Power, Aline Tschanz, Timo Zimmermann, Jonas Ries
Build and operation of a custom 3D, multicolor, single-molecule localization microscope. Nature protocols 19 (8) (2024)
Joshua M Blundon, Brenda I Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim
Skp1 proteins are structural components of the synaptonemal complex in C. elegans . Science advances 10 (7) (2024)
Joshua M Blundon, Brenda I Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim
Skp1 proteins are structural components of the synaptonemal complex in C. elegans . Science advances 10 (7) (2024)
Joshua M Blundon, Brenda I Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim
Skp1 proteins are structural components of the synaptonemal complex in C. elegans . Science advances 10 (7) (2024)
Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization. Nature methods 21 (6) (2024)
Joshua M Blundon, Brenda I Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim
Skp1 proteins are structural components of the synaptonemal complex in C. elegans . Science advances 10 (7) (2024)
Takahiro Deguchi, Jonas Ries
Simple and robust 3D MINFLUX excitation with a variable phase plate. Light, science & applications 13 (1) (2024)
Takahiro Deguchi, Jonas Ries
Simple and robust 3D MINFLUX excitation with a variable phase plate. Light, science & applications 13 (1) (2024)
Rory M Power, Aline Tschanz, Timo Zimmermann, Jonas Ries
Build and operation of a custom 3D, multicolor, single-molecule localization microscope. Nature protocols (2024)
Joshua M Blundon, Brenda I Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim
Skp1 proteins are structural components of the synaptonemal complex in C. elegans . Science advances 10 (7) (2024)
Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization. Nature methods (2024)
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hoerner, Duccio Conti, Michal Skruzny, Jonas Ries
Nanoscale structural organization and stoichiometry of the budding yeast kinetochore. The Journal of cell biology 222 (4) (2023)
Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-Li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li
Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature methods (2023)
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hoerner, Duccio Conti, Michal Skruzny, Jonas Ries
Nanoscale structural organization and stoichiometry of the budding yeast kinetochore. The Journal of cell biology 222 (4) (2023)
Takahiro Deguchi, Malina K Iwanski, Eva-Maria Schentarra, Christopher Heidebrecht, Lisa Schmidt, Jennifer Heck, Tobias Weihs, Sebastian Schnorrenberg, Philipp Hoess, Sheng Liu, Veronika Chevyreva, Kyung Min Noh, Lukas C Kapitein, Jonas Ries
Direct observation of motor protein stepping in living cells using MINFLUX. Science (New York, N.Y.) 379 (6636) (2023)
Takahiro Deguchi, Malina K Iwanski, Eva-Maria Schentarra, Christopher Heidebrecht, Lisa Schmidt, Jennifer Heck, Tobias Weihs, Sebastian Schnorrenberg, Philipp Hoess, Sheng Liu, Veronika Chevyreva, Kyung Min Noh, Lukas C Kapitein, Jonas Ries
Direct observation of motor protein stepping in living cells using MINFLUX. Science (New York, N.Y.) 379 (6636) (2023)
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hoerner, Duccio Conti, Michal Skruzny, Jonas Ries
Nanoscale structural organization and stoichiometry of the budding yeast kinetochore. The Journal of cell biology 222 (4) (2023)
Markus Mund, Aline Tschanz, Yu-Le Wu, Felix Frey, Johanna L Mehl, Marko Kaksonen, Ori Avinoam, Ulrich Sebastian Schwarz, Jonas Ries
Clathrin coats partially preassemble and subsequently bend during endocytosis. The Journal of cell biology 222 (3) (2023)
Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-Li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li
Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature methods 20 (3) (2023)
Sheng Liu, Jianwei Chen, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li, Jonas Ries
Universal inverse modelling of point spread functions for SMLM localization and microscope characterization. bioRxiv : the preprint server for biology (2023)
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hoerner, Duccio Conti, Michal Skruzny, Jonas Ries
Nanoscale structural organization and stoichiometry of the budding yeast kinetochore. The Journal of cell biology 222 (4) (2023)
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hoerner, Duccio Conti, Michal Skruzny, Jonas Ries
Nanoscale structural organization and stoichiometry of the budding yeast kinetochore. The Journal of cell biology 222 (4) (2023)
Markus Mund, Aline Tschanz, Yu-Le Wu, Felix Frey, Johanna L Mehl, Marko Kaksonen, Ori Avinoam, Ulrich Sebastian Schwarz, Jonas Ries
Clathrin coats partially preassemble and subsequently bend during endocytosis. The Journal of cell biology 222 (3) (2023)
Markus Mund, Aline Tschanz, Yu-Le Wu, Felix Frey, Johanna L Mehl, Marko Kaksonen, Ori Avinoam, Ulrich Sebastian Schwarz, Jonas Ries
Clathrin coats partially preassemble and subsequently bend during endocytosis. The Journal of cell biology 222 (3) (2023)
Markus Mund, Aline Tschanz, Yu-Le Wu, Felix Frey, Johanna L Mehl, Marko Kaksonen, Ori Avinoam, Ulrich Sebastian Schwarz, Jonas Ries
Clathrin coats partially preassemble and subsequently bend during endocytosis. The Journal of cell biology 222 (3) (2023)
Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-Li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li
Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature methods 20 (3) (2023)
Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-Li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li
Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature methods 20 (3) (2023)
Markus Mund, Aline Tschanz, Yu-Le Wu, Felix Frey, Johanna L Mehl, Marko Kaksonen, Ori Avinoam, Ulrich Sebastian Schwarz, Jonas Ries
Clathrin coats partially preassemble and subsequently bend during endocytosis. The Journal of cell biology 222 (3) (2023)
Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-Li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li
Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature methods 20 (3) (2023)
Takahiro Deguchi, Malina K Iwanski, Eva-Maria Schentarra, Christopher Heidebrecht, Lisa Schmidt, Jennifer Heck, Tobias Weihs, Sebastian Schnorrenberg, Philipp Hoess, Sheng Liu, Veronika Chevyreva, Kyung Min Noh, Lukas C Kapitein, Jonas Ries
Direct observation of motor protein stepping in living cells using MINFLUX. Science (New York, N.Y.) 379 (6636) (2023)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Andreas Jenner, Aida Peña-Blanco, Raquel Salvador-Gallego, Begoña Ugarte-Uribe, Cristiana Zollo, Tariq Ganief, Jan Bierlmeier, Markus Mund, Jason E Lee, Jonas Ries, Dirk Schwarzer, Boris Macek, Ana J Garcia-Saez
DRP1 interacts directly with BAX to induce its activation and apoptosis. The EMBO journal 41 (8) (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Yiming Li, Wei Shi, Sheng Liu, Ivana Čavka, Yu-Le Wu, Ulf Matti, Decheng Wu, Simone Köhler, Jonas Ries
Global fitting for high-accuracy multi-channel single-molecule localization. Nature communications 13 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Robin Diekmann, Joran Deschamps, Yiming Li, Takahiro Deguchi, Aline Tschanz, Maurice Kahnwald, Ulf Matti, Jonas Ries
Photon-free (s)CMOS camera characterization for artifact reduction in high- and super-resolution microscopy. Nature communications 13 (1) (2022)
Yu-Le Wu, Philipp Hoess, Aline Tschanz, Ulf Matti, Markus Mund, Jonas Ries
Maximum-likelihood model fitting for quantitative analysis of SMLM data. Nature methods 20 (1) (2022)
Hamidreza Heydarian, Maarten Joosten, Adrian Przybylski, Florian Schueder, Ralf Jungmann, Ben van Werkhoven, Jan Keller, Jonas Ries, Sjoerd Stallinga, Mark Bates, Bernd Rieger
3D particle averaging and detection of macromolecular symmetry in localization microscopy. Nature communications 12 (1) (2021)
Susanna M Früh, Ulf Matti, Philipp R Spycher, Marina Rubini, Sebastian Lickert, Thomas Schlichthaerle, Ralf Jungmann, Viola Vogel, Jonas Ries, Ingmar Schoen
Site-Specifically-Labeled Antibodies for Super-Resolution Microscopy Reveal In Situ Linkage Errors. ACS nano (2021)
Artur Speiser, Lucas-Raphael Müller, Philipp Hoess, Ulf Matti, Christopher J Obara, Wesley R Legant, Anna Kreshuk, Jakob H Macke, Jonas Ries, Srinivas C Turaga
Deep learning enables fast and dense single-molecule localization with high accuracy. Nature methods 18 (9) (2021)
Hamidreza Heydarian, Maarten Joosten, Adrian Przybylski, Florian Schueder, Ralf Jungmann, Ben van Werkhoven, Jan Keller-Findeisen, Jonas Ries, Sjoerd Stallinga, Mark Bates, Bernd Rieger
Publisher Correction: 3D particle averaging and detection of macromolecular symmetry in localization microscopy. Nature communications 12 (1) (2021)
Nicolas Lardon, Lu Wang, Aline Tschanz, Philipp Hoess, Mai Tran, Elisa D'Este, Jonas Ries, Kai Johnsson
Systematic Tuning of Rhodamine Spirocyclization for Super-resolution Microscopy. Journal of the American Chemical Society 143 (36) (2021)
Anindita Dasgupta, Joran Deschamps, Ulf Matti, Uwe Hübner, Jan Becker, Sebastian Strauss, Ralf Jungmann, Rainer Heintzmann, Jonas Ries
Direct supercritical angle localization microscopy for nanometer 3D superresolution. Nature communications 12 (1) (2021)
Jonas Ries
SMAP: a modular super-resolution microscopy analysis platform for SMLM data. Nature methods 17 (9) (2020)
Jingyu Wang, Edward S Allgeyer, George Sirinakis, Yongdeng Zhang, Kevin Hu, Mark D Lessard, Yiming Li, Robin Diekmann, Michael A Phillips, Ian M Dobbie, Jonas Ries, Martin J Booth, Joerg Bewersdorf
Implementation of a 4Pi-SMS super-resolution microscope. Nature protocols 16 (2) (2020)
Klaus C Gwosch, Jasmin K Pape, Francisco Balzarotti, Philipp Hoess, Jan Ellenberg, Jonas Ries, Stefan W Hell
MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells. Nature methods 17 (2) (2020)
Daniel Schröder, Joran Deschamps, Anindita Dasgupta, Ulf Matti, Jonas Ries
Cost-efficient open source laser engine for microscopy. Biomedical optics express 11 (2) (2020)
Robin Diekmann, Maurice Kahnwald, Andreas Schoenit, Joran Deschamps, Ulf Matti, Jonas Ries
Optimizing imaging speed and excitation intensity for single-molecule localization microscopy. Nature methods 17 (9) (2020)
Yongdeng Zhang, Lena K Schroeder, Mark D Lessard, Phylicia Kidd, Jeeyun Chung, Yuan-Bin Song, Lorena Benedetti, Yiming Li, Jonas Ries, Jonathan B Grimm, Luke D Lavis, Pietro De Camilli, James E Rothman, David Baddeley, Joerg Bewersdorf
Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging. Nature methods 17 (2) (2020)
Hetty E Manenschijn, Andrea Picco, Markus Mund, Anne-Sophie Rivier-Cordey, Jonas Ries, Marko Kaksonen
Type-I myosins promote actin polymerization to drive membrane bending in endocytosis. eLife 8 (2019)
Michelle S Frei, Philipp Hoess, Marko Lampe, Bianca Nijmeijer, Moritz Kueblbeck, Jan Ellenberg, Hubert Wadepohl, Jonas Ries, Stefan Pitsch, Luc Reymond, Kai Johnsson
Photoactivation of silicon rhodamines via a light-induced protonation. Nature communications 10 (1) (2019)
Thomas Schlichthaerle, Maximillian T Strauss, Florian Schueder, Alexander Auer, Bianca Nijmeijer, Moritz Kueblbeck, Vilma Jimenez Sabinina, Jervis V Thevathasan, Jonas Ries, Jan Ellenberg, Ralf Jungmann
Direct Visualization of Single Nuclear Pore Complex Proteins Using Genetically-Encoded Probes for DNA-PAINT. Angewandte Chemie (International ed. in English) 58 (37) (2019)
Daniel Sage, Thanh-An Pham, Hazen P Babcock, Tomas Lukes, Thomas Pengo, Jerry Chao, Ramraj Velmurugan, Alex David Herbert, Anurag Agrawal, Silvia Colabrese, Ann Wheeler, Anna Archetti, Bernd Rieger, Raimund Ober, Guy M Hagen, Jean-Baptiste Sibarita, Jonas Ries, Ricardo Henriques, Michael Unser, Seamus Holden
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software. Nature methods 16 (5) (2019)
Jervis Vermal Thevathasan, Maurice Kahnwald, Konstanty Cieśliński, Philipp Hoess, Sudheer Kumar Peneti, Manuel Reitberger, Daniel Heid, Krishna Chaitanya Kasuba, Sarah Janice Hoerner, Yiming Li, Yu-Le Wu, Markus Mund, Ulf Matti, Pedro Matos Pereira, Ricardo Henriques, Bianca Nijmeijer, Moritz Kueblbeck, Vilma Jimenez Sabinina, Jan Ellenberg, Jonas Ries
Nuclear pores as versatile reference standards for quantitative superresolution microscopy. Nature methods 16 (10) (2019)
Florian Levet, Guillaume Julien, Rémi Galland, Corey Butler, Anne Beghin, Anaël Chazeau, Philipp Hoess, Jonas Ries, Grégory Giannone, Jean-Baptiste Sibarita
A tessellation-based colocalization analysis approach for single-molecule localization microscopy. Nature communications 10 (1) (2019)
Yiming Li, Markus Mund, Philipp Hoess, Joran Deschamps, Ulf Matti, Bianca Nijmeijer, Vilma Jimenez Sabinina, Jan Ellenberg, Ingmar Schoen, Jonas Ries
Real-time 3D single-molecule localization using experimental point spread functions. Nature methods 15 (5) (2018)
Ingmar Schoen, Lina Aires, Jonas Ries, Viola Vogel
Nanoscale invaginations of the nuclear envelope: Shedding new light on wormholes with elusive function. Nucleus (Austin, Tex.) 8 (5) (2017)
Roshan L Shrestha, Duccio Conti, Naoka Tamura, Dominique Braun, Revathy A Ramalingam, Konstanty Cieslinski, Jonas Ries, Viji M Draviam
Aurora-B kinase pathway controls the lateral to end-on conversion of kinetochore-microtubule attachments in human cells. Nature communications 8 (1) (2017)
Shane J Morley, Yanmei Qi, Loredana Iovino, Laura Andolfi, Da Guo, Nereo Kalebic, Laura Castaldi, Christian Tischer, Carla Portulano, Giulia Bolasco, Kalyanee Shirlekar, Claudia M Fusco, Antonino Asaro, Federica Fermani, Mayya Sundukova, Ulf Matti, Luc Reymond, Adele De Ninno, Luca Businaro, Kai Johnsson, Marco Lazzarino, Jonas Ries, Yannick Schwab, Jing Hu, Paul A Heppenstall
Acetylated tubulin is essential for touch sensation in mice. eLife 5 (2016)