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The neXtProt knowledgebase on human proteins: current status.

Pascale GaudetPierre-André MichelMonique Zahn-ZabalIsabelle CusinPaula D DuekOlivier EvaletAlain GateauAnne GleizesMario PereiraDaniel TeixeiraYing ZhangLydie LaneAmos Bairoch
Published in: Nucleic acids research (2015)
neXtProt (http://www.nextprot.org) is a human protein-centric knowledgebase developed at the SIB Swiss Institute of Bioinformatics. Focused solely on human proteins, neXtProt aims to provide a state of the art resource for the representation of human biology by capturing a wide range of data, precise annotations, fully traceable data provenance and a web interface which enables researchers to find and view information in a comprehensive manner. Since the introductory neXtProt publication, significant advances have been made on three main aspects: the representation of proteomics data, an extended representation of human variants and the development of an advanced search capability built around semantic technologies. These changes are presented in the current neXtProt update.
Keyphrases
  • endothelial cells
  • induced pluripotent stem cells
  • pluripotent stem cells
  • big data
  • mass spectrometry
  • artificial intelligence
  • genome wide
  • deep learning