Description of Mycolicibacterium arenosum sp. nov. Isolated from Coastal Sand on the Yellow Sea Coast.
Jiseon JeongSoyeon AhnThoi Cong TruongJong-Hwa KimVeeraya WeerawongwiwatJung-Sook LeeJung-Hoon YoonAmpaitip SukhoomWonyong KimPublished in: Current microbiology (2024)
A Gram-staining-positive, aerobic, non-spore-forming bacterium was isolated from coastal sand samples from Incheon in the Republic of Korea and designated as strain CAU 1645 T . The optimum conditions for growth were observed at 30 °C in growth media containing 1% (w/v) NaCl at pH 9.0. The predominant respiratory quinone was MK-9 and the major fatty acids were C 16:0 , C 17:1 w7c, and summed feature 7. Similarly, the 16S rRNA gene sequence exhibited the highest similarity with Mycolicibacterium bacteremicum DSM 45578 T and Mycolicibacterium neoaurum JCM 6365 T , both of which exhibited similarity rates of 97.2%. The genomic DNA G+C content was 68.2%. The whole genome of strain CAU 1645 T was obtained and annotated with annotation using RAST server. The pan-genome analysis was determined using Prokka, Roary, and Phandango. In the pan-genome analysis, the strain CAU 1645 T shared 40 core genes with closely related Mycolicibacterium species, including the AcpM gene, the meromycolate extension acyl carrier protein involved in forming impermeable cell walls in mycobacteria. Therefore, our findings demonstrated that the isolate represents a novel species of the genus Mycolicibacterium, for which we propose the name Mycolicibacterium arenosum sp. nov. The type strain is CAU 1645 T (= KCTC 49724 T = MCCC 1K07087 T ).
Keyphrases
- genome wide
- fatty acid
- copy number
- genome wide identification
- climate change
- drinking water
- heavy metals
- dna methylation
- single cell
- machine learning
- risk assessment
- stem cells
- single molecule
- deep learning
- human health
- cell free
- high intensity
- amino acid
- transcription factor
- rna seq
- bone marrow
- circulating tumor cells
- bioinformatics analysis
- water quality
- nucleic acid