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An allosteric modulator binds to a conformational hub in the β2 adrenergic receptor.

Xiangyu LiuJonas KaindlMagdalena KorczynskaAnne StößelDaniela DenglerMarkus StanekHarald HübnerMary J ClarkJake MahoneyRachel Ann MattXinyu XuKunio HirataBrian K ShoichetRoger K SunaharaBrian K KobilkaPeter Gmeiner
Published in: Nature chemical biology (2020)
Most drugs acting on G-protein-coupled receptors target the orthosteric binding pocket where the native hormone or neurotransmitter binds. There is much interest in finding allosteric ligands for these targets because they modulate physiologic signaling and promise to be more selective than orthosteric ligands. Here we describe a newly developed allosteric modulator of the β2-adrenergic receptor (β2AR), AS408, that binds to the membrane-facing surface of transmembrane segments 3 and 5, as revealed by X-ray crystallography. AS408 disrupts a water-mediated polar network involving E1223.41 and the backbone carbonyls of V2065.45 and S2075.46. The AS408 binding site is adjacent to a previously identified molecular switch for β2AR activation formed by I3.40, P5.50 and F6.44. The structure reveals how AS408 stabilizes the inactive conformation of this switch, thereby acting as a negative allosteric modulator for agonists and positive allosteric modulator for inverse agonists.
Keyphrases
  • molecular dynamics
  • small molecule
  • binding protein
  • magnetic resonance
  • network analysis
  • computed tomography
  • molecular dynamics simulations
  • big data
  • single molecule
  • electron microscopy
  • bioinformatics analysis