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Xanthomonas chitinilytica sp. nov., a novel chitinolytic bacterium isolated from a microbial fermentation bed material.

Xiaodong LiuXin LiuZhenshan DengXiaolong HeYingying Jiang
Published in: Antonie van Leeuwenhoek (2024)
A Gram-stain-negative bacterium, H13-6 T , was isolated from a microbial fermentation bed material collected from a pig farm located in Yan'an, Shaanxi, China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain H13-6 T was affiliated with the genus Xanthomonas and showed highest similarity to strain Xanthomonas maliensis M97 T (98.38%), Xanthomonas prunicola CFBP 8353 T (98.26%) and Xanthomonas oryzae ATCC 35933 T (98.11%). The pairwise ortho Average Nucleotide Identity values and the digital DNA-DNA hybridization values between strain H13-6 T and the other Xanthomonas species were all below their respective cut-offs. Two genes encoding for chitinase were found and the strain showed a strong chitin-degrading activity. The major fatty acids were Iso-C 15:0 (55.9%), Antesio-C 15:0 (7.4%) and Iso-C 11:0 (5.5%) and the major polar lipids were diphosphatidylglycerol, phosphatidyglycerol and phosphatidylethanolamine. Based on the phenotypic properties and phylogenetic distinctiveness, Xanthomonas chitinilytica was proposed as a novel species of the genus Xanthomonas, with strain H13-6 T (= CGMCC 1.61317 T  = NBRC 115641 T ) as type strain.
Keyphrases
  • fatty acid
  • single molecule
  • circulating tumor
  • genome wide
  • microbial community
  • cell free
  • nucleic acid
  • dna methylation
  • ionic liquid
  • gram negative
  • circulating tumor cells