Two RECK Splice Variants (Long and Short) Are Differentially Expressed in Patients with Stable and Unstable Coronary Artery Disease: A Pilot Study.
Chiara VancheriElena MoriniFrancesca Romana PrandiElie AlkhouryRoberto CelottoFrancesco RomeoGiuseppe NovelliFrancesca AmatiPublished in: Genes (2021)
Primary prevention is crucial for coronary heart disease (CAD) and the identification of new reliable biomarkers might help risk stratification or predict adverse coronary events. Alternative splicing (AS) is a less investigated genetic factors implicated in CAD etiology. We performed an RNA-seq study on PBMCs from CAD patients and control subjects (CTR) and observed 113 differentially regulated AS events (24 up and 89 downregulated) in 86 genes. The RECK (Reversion-inducing-cysteine-rich protein with Kazal motifs) gene was further analyzed in a larger case study (24 CTR subjects, 72 CAD and 32 AMI patients) for its Splicing-Index FC (FC = -2.64; p = 0.0217), the AS event involving an exon (exon 18), and its role in vascular inflammation and remodeling. We observed a significant downregulation of Long RECK splice variant (containing exon 18) in PBMCs of AMI compared to CTR subjects (FC = -3.3; p < 0.005). Interestingly, the Short RECK splice variant (lacking exon 18) was under-expressed in AMI compared to both CTR (FC = -4.5; p < 0.0001) and CAD patients (FC = -4.2; p < 0.0001). A ROC curve, constructed combining Long and Short RECK expression data, shows an AUC = 0.81 (p < 0.001) to distinguish AMI from stable CAD patients. A significant negative correlation between Long RECK and triglycerides in CTR group and a positive correlation in the AMI group was found. The combined evaluation of Long and Short RECK expression levels is a potential genomic biomarker for the discrimination of AMI from CAD patients. Our results underline the relevance of deeper studies on the expression of these two splice variants to elucidate their functional role in CAD development and progression.
Keyphrases
- coronary artery disease
- end stage renal disease
- ejection fraction
- newly diagnosed
- acute myocardial infarction
- peritoneal dialysis
- rna seq
- prognostic factors
- poor prognosis
- emergency department
- copy number
- heart failure
- percutaneous coronary intervention
- acute coronary syndrome
- type diabetes
- cardiovascular disease
- gene expression
- high resolution
- coronary artery bypass grafting
- patient reported outcomes
- signaling pathway
- cell proliferation
- cardiovascular events
- binding protein
- oxidative stress
- single cell
- small molecule
- artificial intelligence
- aortic valve
- electronic health record
- single molecule
- atrial fibrillation
- high speed
- living cells