Bi-alignments with affine gaps costs.
Peter F StadlerSebastian WillPublished in: Algorithms for molecular biology : AMB (2022)
The affine cost bi-alignment algorithm has been implemented in Python 3 and Cython. It is available as free software from https://github.com/s-will/BiAlign/releases/tag/v0.3 and as bioconda package bialign.