Peter F Stadler (Peter Stadler)

Scopus Author ID ResearcherID Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 87

Top Venues

Scientific reports

Nature genetics

RNA biology

Journal of mathematical biology

Max Planck Institute for Mathematics in the Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Max Planck Institute for Mathematics in the Sciences Mar 01 2009

Germany

External Scientific Member

Universität Leipzig Sep 01 2002

Germany

_ Professor of Bioinformatics :: Computer Science

Max-Planck-Institut für biophysikalische Chemie Jul 01 1990 - Sep 30 1991

Germany

PostDoc

Publications

Anne Hoffmann, Christian Lorenz, Jörg Fallmann, Philippe Wolff, Antony Lechner, Heike Betat, Mario Mörl, Peter F Stadler
Temperature-Dependent tRNA Modifications in Bacillales. International journal of molecular sciences 25 (16) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Annika Freudiger, Vladimir M Jovanovic, Yilei Huang, Noah James Snyder-Mackler, Donald F Conrad, Brian Miller, Michael J Montague, Hendrikje Westphal, Peter F Stadler, Stefanie Bley, Julie E Horvath, Lauren J N Brent, Michael L Platt, Angelina V Ruiz-Lambides, Jenny Tung, Katja Nowick, Harald Ringbauer, Anja Widdig
Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. bioRxiv : the preprint server for biology (2024)
Anne Hoffmann, Christian Lorenz, Jörg Fallmann, Philippe Wolff, Antony Lechner, Heike Betat, Mario Mörl, Peter F Stadler
Temperature-Dependent tRNA Modifications in Bacillales. International journal of molecular sciences 25 (16) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F Stadler, Anton I Petrov, Michael Niepmann, Manja Marz
Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus. Scientific reports 14 (1) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F Stadler, Anton I Petrov, Michael Niepmann, Manja Marz
Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus. Scientific reports 14 (1) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Annika Freudiger, Vladimir M Jovanovic, Yilei Huang, Noah James Snyder-Mackler, Donald F Conrad, Brian Miller, Michael J Montague, Hendrikje Westphal, Peter F Stadler, Stefanie Bley, Julie E Horvath, Lauren J N Brent, Michael L Platt, Angelina V Ruiz-Lambides, Jenny Tung, Katja Nowick, Harald Ringbauer, Anja Widdig
Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. bioRxiv : the preprint server for biology (2024)
Annika Freudiger, Vladimir M Jovanovic, Yilei Huang, Noah James Snyder-Mackler, Donald F Conrad, Brian Miller, Michael J Montague, Hendrikje Westphal, Peter F Stadler, Stefanie Bley, Julie E Horvath, Lauren J N Brent, Michael L Platt, Angelina V Ruiz-Lambides, Jenny Tung, Katja Nowick, Harald Ringbauer, Anja Widdig
Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. bioRxiv : the preprint server for biology (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F Stadler, Anton I Petrov, Michael Niepmann, Manja Marz
Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus. Scientific reports 14 (1) (2024)
Andrés M Bran, Peter F Stadler, Jürgen Jost, Guillermo Restrepo
The six stages of the convergence of the periodic system to its final structure. Communications chemistry 6 (1) (2023)
Marieke Vromman, Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, Paul Flicek, Enrico Gaffo, Wanjun Gu, Chunjiang He, Steve Hoffmann, Osagie G Izuogu, Michael S Jackson, Tobias Jakobi, Eric C Lai, Justine Nuytens, Julia Salzman, Mauro Santibanez-Koref, Peter F Stadler, Olivier Thas, Eveline Vanden Eynde, Kimberly Verniers, Guoxia Wen, Jakub Orzechowski Westholm, Li Yang, Chu-Yu Ye, Nurten Yigit, Guo-Hua Yuan, Jinyang Zhang, Fangqing Zhao, Jo Vandesompele, Pieter-Jan Volders
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision. Nature methods (2023)
Christiane Gärtner, Jörg Fallmann, Peter F Stadler, Thorsten Kaiser, Sarah J Berkemer
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis. Journal of personalized medicine 13 (6) (2023)
Christopher Klapproth, Siegfried Zötzsche, Felix Kühnl, Jörg Fallmann, Peter F Stadler, Sven Findeiß
Tailored machine learning models for functional RNA detection in genome-wide screens. NAR genomics and bioinformatics 5 (3) (2023)
Fatma Chafra, Felipe Borim Correa, Faith Oni, Özlen Konu Karakayalı, Peter F Stadler, Ulisses Nunes da Rocha
StandEnA: a customizable workflow for standardized annotation and generating a presence-absence matrix of proteins. Bioinformatics advances 3 (1) (2023)
Andrés M Bran, Peter F Stadler, Jürgen Jost, Guillermo Restrepo
The six stages of the convergence of the periodic system to its final structure. Communications chemistry 6 (1) (2023)
Andrés M Bran, Peter F Stadler, Jürgen Jost, Guillermo Restrepo
The six stages of the convergence of the periodic system to its final structure. Communications chemistry 6 (1) (2023)
Tim Kolberg, Sarah von Löhneysen, Iuliia Ozerova, Karolin Wellner, Roland K Hartmann, Peter F Stadler, Mario Mörl
Led-Seq: ligation-enhanced double-end sequence-based structure analysis of RNA. Nucleic acids research (2023)
John Anders, Peter F Stadler
RNAcode_Web - Convenient identification of evolutionary conserved protein coding regions. Journal of integrative bioinformatics (2023)
Christiane Gärtner, Jörg Fallmann, Peter F Stadler, Thorsten Kaiser, Sarah J Berkemer
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis. Journal of personalized medicine 13 (6) (2023)
Stefan Müller, Christoph Flamm, Peter F Stadler
What makes a reaction network "chemical"? Journal of cheminformatics 14 (1) (2022)
Peter F Stadler, Sebastian Will
Bi-alignments with affine gaps costs. Algorithms for molecular biology : AMB 17 (1) (2022)
Robson P Bonidia, Anderson P Avila Santos, Breno L S de Almeida, Peter F Stadler, Ulisses Nunes da Rocha, Danilo S Sanches, André Carlos Ponce de Leon Ferreira de Carvalho
Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy. Entropy (Basel, Switzerland) 24 (10) (2022)
Franziska Reinhardt, Peter F Stadler
ExceS-A: an exon-centric split aligner. Journal of integrative bioinformatics 19 (1) (2022)
Anna Ender, Nadine Grafl, Tim Kolberg, Sven Findeiß, Peter F Stadler, Mario Mörl
Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes. RNA (New York, N.Y.) 28 (4) (2022)
V Janett Olzog, Christiane Gärtner, Peter F Stadler, Jörg Fallmann, Christina E Weinberg
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cy clic p hosphates and 5' hy droxyl ends. RNA biology 18 (sup2) (2021)
David Schaller, Manuela Geiß, Edgar Chávez, Marcos González Laffitte, Alitzel López Sánchez, Bärbel M R Stadler, Dulce I Valdivia, Marc Hellmuth, Maribel Hernández Rosales, Peter F Stadler
Corrigendum to "Best match graphs". Journal of mathematical biology 82 (6) (2021)
Natasha Andressa Nogueira Jorge, Uwe Ueberham, Mara Knobloch, Peter F Stadler, Jörg Fallmann, Thomas Arendt
Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease. Scientific reports 11 (1) (2021)
Adam Nunn, Sultan Nilay Can, Christian Otto, Mario Fasold, Bárbara Díez Rodríguez, Noe Fernandez Pozo, Stefan Andreas Rensing, Peter F Stadler, David Langenberger
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics. NAR genomics and bioinformatics 3 (4) (2021)
Natasha Andressa Nogueira Jorge, Uwe Ueberham, Mara Knobloch, Peter F Stadler, Jörg Fallmann, Thomas Arendt
Author Correction: Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease. Scientific reports 11 (1) (2021)
João Pedro Saraiva, Alexander Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter F Stadler, Oscar Dias, Ulisses Nunes da Rocha
OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes. Life science alliance 4 (12) (2021)
Anne Hoffmann, Lieselotte Erber, Heike Betat, Peter F Stadler, Mario Mörl, Jörg Fallmann
Changes of the tRNA Modification Pattern during the Development of Dictyostelium discoideum. Non-coding RNA 7 (2) (2021)
Laura Krieg, Konrad Didt, Isabel Karkossa, Stephan H Bernhart, Stephanie Kehr, Narmadha Subramanian, Andreas Lindhorst, Alexander Schaudinn, Shirin Tabei, Maria Keller, Michael Stumvoll, Arne Dietrich, Martin Von Bergen, Peter F Stadler, Jurga Laurencikiene, Martin Krüger, Matthias Blüher, Martin Gericke, Kristin Schubert, Peter Kovacs, Rima M Chakaroun, Lucas Massier
Multiomics reveal unique signatures of human epiploic adipose tissue related to systemic insulin resistance. Gut (2021)
Christopher Klapproth, Rituparno Sen, Peter F Stadler, Sven Findeiß, Jörg Fallmann
Common Features in lncRNA Annotation and Classification: A Survey. Non-coding RNA 7 (4) (2021)
Daniel Hübschmann, Kortine Kleinheinz, Rabea Wagener, Stephan H Bernhart, Cristina López, Umut H Toprak, Stephanie Sungalee, Naveed Ishaque, Helene Kretzmer, Markus Kreuz, Sebastian M Waszak, Nagarajan Paramasivam, Ole Ammerpohl, Sietse M Aukema, Renée Beekman, Anke K Bergmann, Matthias Bieg, Hans Binder, Arndt Borkhardt, Christoph Borst, Benedikt Brors, Philipp Bruns, Enrique Carrillo de Santa Pau, Alexander Claviez, Gero Doose, Andrea Haake, Dennis Karsch, Siegfried Haas, Martin-Leo Hansmann, Jessica I Hoell, Volker Hovestadt, Bingding Huang, Michael Hummel, Christina Jäger-Schmidt, Jules N A Kerssemakers, Jan O Korbel, Dieter Kube, Chris Lawerenz, Dido Lenze, Joost H A Martens, German Ott, Bernhard Radlwimmer, Eva Reisinger, Julia Richter, Daniel Rico, Philip Rosenstiel, Andreas Rosenwald, Markus Schillhabel, Stephan Stilgenbauer, Peter F Stadler, José Ignacio Martin-Subero, Monika Szczepanowski, Gregor Warsow, Marc A Weniger, Marc Zapatka, Alfonso Valencia, Hendrik G Stunnenberg, Peter Lichter, Peter Möller, Markus Loeffler, Roland Eils, Wolfram Klapper, Steve Hoffmann, Lorenz Trümper, null null, null null, null null, Ralf Küppers, Matthias Schlesner, Reiner Siebert
Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia 35 (7) (2021)
Peter F Stadler
Alignments of biomolecular contact maps. Interface focus 11 (4) (2021)
David Schaller, Marc Hellmuth, Peter F Stadler
A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set. Algorithms for molecular biology : AMB 16 (1) (2021)
Cristian A Velandia-Huerto, Jörg Fallmann, Peter F Stadler
miRNAture-Computational Detection of microRNA Candidates. Genes 12 (3) (2021)
David Schaller, Manuela Geiß, Peter F Stadler, Marc Hellmuth
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs. Journal of mathematical biology 82 (3) (2021)
Ernesto Parra-Rincón, Cristian A Velandia-Huerto, Adriaan Gittenberger, Jörg Fallmann, Thomas Gatter, Federico D Brown, Peter F Stadler, Clara Isabel Bermudez-Santana
The Genome of the "Sea Vomit" Didemnum vexillum . Life (Basel, Switzerland) 11 (12) (2021)
Ronny Lorenz, Peter F Stadler
RNA Secondary Structures with Limited Base Pair Span: Exact Backtracking and an Application. Genes 12 (1) (2020)
Jose Antonio Corona-Gomez, Irving Jair Garcia-Lopez, Peter F Stadler, Selene L Fernández-Valverde
Splicing conservation signals in plant long noncoding RNAs. RNA (New York, N.Y.) 26 (7) (2020)
Christian Günzel, Felix Kühnl, Katharina Arnold, Sven Findeiß, Christina E Weinberg, Peter F Stadler, Mario Mörl
Beyond Plug and Pray: Context Sensitivity and in silico Design of Artificial Neomycin Riboswitches. RNA biology 18 (4) (2020)
Iwona Nowak, Elżbieta Boratyn, Sebastian Student, Stephan H Bernhart, Jörg Fallmann, Małgorzata Durbas, Peter F Stadler, Hanna Rokita
MCPIP1 ribonuclease can bind and cleave AURKA mRNA in MYCN-amplified neuroblastoma cells. RNA biology 18 (1) (2020)
Peter F Stadler, Manuela Geiß, David Schaller, Alitzel López Sánchez, Marcos González Laffitte, Dulce I Valdivia, Marc Hellmuth, Maribel Hernández Rosales
From pairs of most similar sequences to phylogenetic best matches. Algorithms for molecular biology : AMB 15 (2020)
Anne Nitsche, Christian Arnold, Uwe Ueberham, Kristin Reiche, Jörg Fallmann, Jörg Hackermüller, Friedemann Horn, Peter F Stadler, Thomas Arendt
Alzheimer-related genes show accelerated evolution. Molecular psychiatry (2020)
Lieselotte Erber, Anne Hoffmann, Jörg Fallmann, Monica Hagedorn, Christian Hammann, Peter F Stadler, Heike Betat, Sonja Prohaska, Mario Mörl
Unusual Occurrence of Two Bona-Fide CCA-Adding Enzymes in Dictyostelium discoideum. International journal of molecular sciences 21 (15) (2020)
Manuela Geiß, Marcos E González Laffitte, Alitzel López Sánchez, Dulce I Valdivia, Marc Hellmuth, Maribel Hernández Rosales, Peter F Stadler
Best match graphs and reconciliation of gene trees with species trees. Journal of mathematical biology 80 (5) (2020)
Sarah J Berkemer, Lisa-Katharina Maier, Fabian Amman, Stephan H Bernhart, Julia Wörtz, Pascal Märkle, Friedhelm Pfeiffer, Peter F Stadler, Anita Marchfelder
Identification of RNA 3´ ends and termination sites in Haloferax volcanii. RNA biology 17 (5) (2020)
Rituparno Sen, Jörg Fallmann, Maria Emília M T Walter, Peter F Stadler
Are spliced ncRNA host genes distinct classes of lncRNAs? Theory in biosciences = Theorie in den Biowissenschaften 139 (4) (2020)
Polina Drozdova, Lorena Rivarola-Duarte, Daria Bedulina, Denis Axenov-Gribanov, Stephan Schreiber, Anton Gurkov, Zhanna Shatilina, Kseniya Vereshchagina, Yulia Lubyaga, Ekaterina Madyarova, Christian Otto, Frank Jühling, Wibke Busch, Lena Jakob, Magnus Lucassen, Franz Josef Sartoris, Jörg Hackermüller, Steve Hoffmann, Hans-Otto Pörtner, Till Luckenbach, Maxim Timofeyev, Peter F Stadler
Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods. BMC genomics 20 (1) (2019)
Eugenio J Llanos, Wilmer Leal, Duc H Luu, Jürgen Jost, Peter F Stadler, Guillermo Restrepo
Exploration of the chemical space and its three historical regimes. Proceedings of the National Academy of Sciences of the United States of America 116 (26) (2019)
Katrin S Kurz, Kortine Kleinheinz, Sietse M Aukema, Marius Rohde, Stephan H Bernhart, Daniel Hübschmann, Rabea Wagener, Umut H Toprak, Francesco Raimondi, Markus Kreuz, Sebastian M Waszak, Zhiqin Huang, Lina Sieverling, Nagarajan Paramasivam, Julian Seufert, Stephanie Sungalee, Robert B Russell, Julia Bausinger, Helene Kretzmer, Ole Ammerpohl, Anke K Bergmann, Hans Binder, Arndt Borkhardt, Benedikt Brors, Alexander Claviez, Gero Doose, Lars Feuerbach, Andrea Haake, Martin-Leo Hansmann, Jessica Hoell, Michael Hummel, Jan O Korbel, Chris Lawerenz, Dido Lenze, Bernhard Radlwimmer, Julia Richter, Philip Rosenstiel, Andreas Rosenwald, Markus B Schilhabel, Harald Stein, Stephan Stilgenbauer, Peter F Stadler, Monika Szczepanowski, Marc A Weniger, Marc Zapatka, Roland Eils, Peter Lichter, Markus Loeffler, Peter Möller, Lorenz Trümper, Wolfram Klapper, null null, Steve Hoffmann, Ralf Küppers, Birgit Burkhardt, Matthias Schlesner, Reiner Siebert
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma. Nature communications 10 (1) (2019)
Kai Kamm, Hans-Jürgen Osigus, Peter F Stadler, Rob DeSalle, Bernd Schierwater
Genome analyses of a placozoan rickettsial endosymbiont show a combination of mutualistic and parasitic traits. Scientific reports 9 (1) (2019)
Polina B Drozdova, Daria Bedulina, Ekaterina Madyarova, Lorena Rivarola-Duarte, Stephan Schreiber, Peter F Stadler, Till Luckenbach, Maxim A Timofeyev
Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods. Scientific reports 9 (1) (2019)
Lieselotte Erber, Anne Hoffmann, Jörg Fallmann, Heike Betat, Peter F Stadler, Mario Mörl
LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): specific selection of tRNAs with 3'-CCA end for high-throughput sequencing. RNA biology 17 (1) (2019)
Manuela Geiß, Edgar Chávez, Marcos González Laffitte, Alitzel López Sánchez, Bärbel M R Stadler, Dulce I Valdivia, Marc Hellmuth, Maribel Hernández Rosales, Peter F Stadler
Best match graphs. Journal of mathematical biology 78 (7) (2019)
Maria Waldl, Bernhard C Thiel, Roman Ochsenreiter, Alexander Holzenleiter, João Victor de Araujo Oliveira, Maria Emília M T Walter, Michael T Wolfinger, Peter F Stadler
TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes. Genes 9 (8) (2018)
Rolf Fagerberg, Christoph Flamm, Rojin Kianian, Daniel Merkle, Peter F Stadler
Finding the K best synthesis plans. Journal of cheminformatics 10 (1) (2018)
Nancy Retzlaff, Peter F Stadler
Phylogenetics beyond biology. Theory in biosciences = Theorie in den Biowissenschaften 137 (2) (2018)
Kai Kamm, Hans-Jürgen Osigus, Peter F Stadler, Rob DeSalle, Bernd Schierwater
Trichoplax genomes reveal profound admixture and suggest stable wild populations without bisexual reproduction. Scientific reports 8 (1) (2018)
Alexander Donath, Peter F Stadler
Split-inducing indels in phylogenomic analysis. Algorithms for molecular biology : AMB 13 (2018)
Haleh Ebadi, Michael Perry, Keith Short, Konstantin Klemm, Claude Desplan, Peter F Stadler, Anita Mehta
Patterning the insect eye: From stochastic to deterministic mechanisms. PLoS computational biology 14 (11) (2018)
Manfred D Laubichler, Sonja J Prohaska, Peter F Stadler
Toward a mechanistic explanation of phenotypic evolution: The need for a theory of theory integration. Journal of experimental zoology. Part B, Molecular and developmental evolution 330 (1) (2018)
Sebastian Canzler, Peter F Stadler, Jana Hertel
Evolution of Fungal U3 snoRNAs: Structural Variation and Introns. Non-coding RNA 3 (1) (2017)
Sarah J Berkemer, Anne Hoffmann, Cameron R A Murray, Peter F Stadler
SMORE: Synteny Modulator of Repetitive Elements. Life (Basel, Switzerland) 7 (4) (2017)
Rituparno Sen, Gero Doose, Peter F Stadler
Rare Splice Variants in Long Non-Coding RNAs. Non-coding RNA 3 (3) (2017)
Ali M Yazbeck, Kifah R Tout, Peter F Stadler
Detailed secondary structure models of invertebrate 7SK RNAs. RNA biology 15 (2) (2017)
Sonja J Prohaska, Sarah J Berkemer, Fabian Gärtner, Thomas Gatter, Nancy Retzlaff, null null, Christian Höner Zu Siederdissen, Peter F Stadler
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem. Journal of mathematical biology 77 (2) (2017)
Stefanie Binder, Nadine Hösler, Diana Riedel, Ivonne Zipfel, Tilo Buschmann, Christoph Kämpf, Kristin Reiche, Renate Burger, Martin Gramatzki, Jörg Hackermüller, Peter F Stadler, Friedemann Horn
STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer. Scientific reports 7 (1) (2017)
Matus Valach, Sandrine Moreira, Steve Hoffmann, Peter F Stadler, Gertraud Burger
Keeping it complicated: Mitochondrial genome plasticity across diplonemids. Scientific reports 7 (1) (2017)
Christina L Richards, Conchita Alonso, Claude Becker, Oliver Bossdorf, Etienne Bucher, Maria Colomé-Tatché, Walter Durka, Jan Engelhardt, Bence Gaspar, Andreas Gogol-Döring, Ivo Grosse, Thomas P van Gurp, Katrin Heer, Ilkka Kronholm, Christian Lampei, Vít Latzel, Marie Mirouze, Lars Opgenoorth, Ovidiu Paun, Sonja J Prohaska, Stefan Andreas Rensing, Peter F Stadler, Emiliano Trucchi, Kristian Karsten Ullrich, Koen J F Verhoeven
Ecological plant epigenetics: Evidence from model and non-model species, and the way forward. Ecology letters 20 (12) (2017)
Cristian A Velandia-Huerto, Adriaan A Gittenberger, Federico D Brown, Peter F Stadler, Clara I Bermúdez-Santana
Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum. BMC genomics 17 (2016)
Deblina Patra Bhattacharya, Sebastian Canzler, Stephanie Kehr, Jana Hertel, Ivo Grosse, Peter F Stadler
Phylogenetic distribution of plant snoRNA families. BMC genomics 17 (1) (2016)
Damián E Blasi, Søren Wichmann, Harald Hammarström, Peter F Stadler, Morten H Christiansen
Sound-meaning association biases evidenced across thousands of languages. Proceedings of the National Academy of Sciences of the United States of America 113 (39) (2016)
David C Krakauer, Lydia Müller, Sonja J Prohaska, Peter F Stadler
Design specifications for cellular regulation. Theory in biosciences = Theorie in den Biowissenschaften 135 (4) (2016)
Francesco Righetti, Aaron M Nuss, Christian Twittenhoff, Sascha Beele, Kristina Urban, Sebastian Will, Stephan H Bernhart, Peter F Stadler, Petra Dersch, Franz Narberhaus
Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis. Proceedings of the National Academy of Sciences of the United States of America 113 (26) (2016)
Cristian A Velandia-Huerto, Sarah J Berkemer, Anne Hoffmann, Nancy Retzlaff, Liliana C Romero Marroquín, Maribel Hernández-Rosales, Peter F Stadler, Clara I Bermúdez-Santana
Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies. BMC genomics 17 (1) (2016)
Anne Nitsche, Peter F Stadler
Evolutionary clues in lncRNAs. Wiley interdisciplinary reviews. RNA 8 (1) (2016)
Anne Nitsche, Dominic Rose, Mario Fasold, Kristin Reiche, Peter F Stadler
Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved. RNA (New York, N.Y.) 21 (5) (2015)

Peter F Stadler.css-eqlu8i{font-size:small;padding-left:4px;} (Peter Stadler)

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Peter F Stadler (Peter Stadler)