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Optimizing single-cell RNA sequencing methods for human colon biopsies: droplet-based vs. picowell-based platforms.

Jonathan M DownieRyan J MusichConnor M GeraghtyAlexander CaraballoShijie HeSaleh KhawaledKylor LachutTimothy LongJulie Y ZhouOmer H YilmazThaddeus StappenbeckAndrew T ChanDavid A Drew
Published in: bioRxiv : the preprint server for biology (2024)
Our results highlight non-overlapping advantages of P-scRNA and D-scRNA and underscore the need for innovation to enable high-fidelity capture of colonic epithelial cells. The platform-specific variation highlights the challenges of maintaining rigor and reproducibility across studies that use different platforms.
Keyphrases
  • single cell
  • high throughput
  • rna seq
  • endothelial cells
  • induced pluripotent stem cells
  • pluripotent stem cells
  • ultrasound guided