Common gene variants within 3'-untranslated regions as modulators of multiple myeloma risk and survival.
Ombretta MelaiuAngelica MacaudaJuan SainzDiego CalvettiMaria Sole FacioniGiuseppe MaccariRob Ter HorstMihai G NeteaYang LiNorbert GrząśkoVictor MorenoArtur JurczyszynAndrés JerezMarzena WatekJudit VarkonyiRamon Garcia-SanzMarcin KruszewskiMarek DudzińskiKatalin KadarSvend Erik Hove JacobsenGrzegorz MazurVibeke AndersenMalwina RybickaDaria ZawirskaMalgorzata RaźnyJan Maciej ZauchaOlga OstrovskyElzbieta Iskierka-JazdzewskaRui Manuel ReisAnna StępieńKatia BeiderArnon NaglerAgnieszka Druzd-SitekHerlander MarquesJoaquin Martìnez-LopezFabienne LesueurHervé Avet-LoiseauAnnette Juul VangstedMalgorzata Krawczyk-KulisAleksandra ButrymKrzysztof JamroziakCharles DumontetUlla VogelMarcin RymkoMatteo PelosiniEdyta SuboczGergely SzombathMaria Eugenia SarasqueteRoberto SilvestriFederica MoraniStefano LandiDaniele CampaFederico CanzianFederica GemignaniPublished in: International journal of cancer (2020)
We evaluated the association between germline genetic variants located within the 3'-untranlsated region (polymorphic 3'UTR, ie, p3UTR) of candidate genes involved in multiple myeloma (MM). We performed a case-control study within the International Multiple Myeloma rESEarch (IMMEnSE) consortium, consisting of 3056 MM patients and 1960 controls recruited from eight countries. We selected p3UTR of six genes known to act in different pathways relevant in MM pathogenesis, namely KRAS (rs12587 and rs7973623), VEGFA (rs10434), SPP1 (rs1126772), IRF4 (rs12211228) and IL10 (rs3024496). We found that IL10-rs3024496 was associated with increased risk of developing MM and with a worse overall survival of MM patients. The variant allele was assayed in a vector expressing eGFP chimerized with the IL10 3'-UTR and it was found functionally active following transfection in human myeloma cells. In this experiment, the A-allele caused a lower expression of the reporter gene and this was also in agreement with the in vivo expression of mRNA measured in whole blood as reported in the GTEx portal. Overall, these data are suggestive of an effect of the IL10-rs3024496 SNP on the regulation of IL10 mRNA expression and it could have clinical implications for better characterization of MM patients in terms of prognosis.
Keyphrases
- multiple myeloma
- end stage renal disease
- newly diagnosed
- ejection fraction
- chronic kidney disease
- genome wide
- poor prognosis
- copy number
- peritoneal dialysis
- small molecule
- dna methylation
- oxidative stress
- long non coding rna
- dendritic cells
- gene expression
- big data
- data analysis
- transcription factor
- cell cycle arrest
- genome wide analysis