A gene expression atlas of adult Schistosoma mansoni and their gonads.
Zhigang LuFlorian SesslerNancy HolroydSteffen HahnelThomas QuackMatthew BerrimanChristoph G GreveldingPublished in: Scientific data (2017)
RNA-Seq has proven excellence in providing information about the regulation and transcript levels of genes. We used this method for profiling genes in the flatworm Schistosoma mansoni. This parasite causes schistosomiasis, an infectious disease of global importance for human and animals. The pathology of schistosomiasis is associated with the eggs, which are synthesized as a final consequence of male and female adults pairing. The male induces processes in the female that lead to the full development of its gonads as a prerequisite for egg production. Unpaired females remain sexually immature. Based on an organ-isolation method we obtained gonad tissue for RNA extraction from paired and unpaired schistosomes, with whole adults included as controls. From a total of 23 samples, we used high-throughput cDNA sequencing (RNA-Seq) on the Illumina platform to profile gene expression between genders and tissues, with and without pairing influence. The data obtained provide a wealth of information on the reproduction biology of schistosomes and a rich resource for exploitation through basic and applied research activities.
Keyphrases
- rna seq
- single cell
- gene expression
- high throughput
- infectious diseases
- dna methylation
- genome wide
- endothelial cells
- genome wide identification
- health information
- bioinformatics analysis
- electronic health record
- social media
- plasmodium falciparum
- big data
- healthcare
- transcription factor
- toxoplasma gondii
- nucleic acid
- artificial intelligence
- high throughput sequencing