Matthew Berriman (Matt Berriman, M Berriman)

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 69

Top Topics

Plasmodium Falciparum

Top Venues

Wellcome open research

Nature communications

PLoS neglected tropical diseases

This page only lists publications with an associated author ORCID identifier.

Publications

Teresa Attenborough, Kate A Rawlinson, Carmen L Diaz Soria, Kirsty Ambridge, Geetha Sankaranarayanan, Jennie Graham, James A Cotton, Stephen R Doyle, Gabriel Rinaldi, Matthew Berriman
A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife 13 (2024)
Frédéric D Chevalier, Winka LE Clec'h, Matthew Berriman, Timothy J C Anderson
A single locus determines praziquantel response in Schistosoma mansoni . Antimicrobial agents and chemotherapy 68 (3) (2024)
Frédéric D Chevalier, Winka LE Clec'h, Matthew Berriman, Timothy J C Anderson
A single locus determines praziquantel response in Schistosoma mansoni . Antimicrobial agents and chemotherapy (2024)
Duncan J Berger, Sang-Kyu Park, Thomas Crellen, Tushabe John Vianney, Narcis B Kabatereine, James A Cotton, Richard Sanya, Alison Elliot, Edridah M Tukahebwa, Moses Adriko, Claire J Standley, Anouk Gouvras, Safari Kinung'hi, Helmut Haas, Muriel Rabone, Aidan Emery, Poppy H L Lamberton, Bonnie L Webster, Fiona Allan, Sarah Buddenborg, Matthew Berriman, Jonathan S Marchant, Stephen R Doyle, Joanne P Webster
Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni . bioRxiv : the preprint server for biology (2024)
Teresa Attenborough, Kate A Rawlinson, Carmen L Diaz Soria, Kirsty Ambridge, Geetha Sankaranarayanan, Jennie Graham, James A Cotton, Stephen R Doyle, Gabriel Rinaldi, Matthew Berriman
A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife 13 (2024)
Frédéric D Chevalier, Winka LE Clec'h, Matthew Berriman, Timothy J C Anderson
A single locus determines praziquantel response in Schistosoma mansoni . Antimicrobial agents and chemotherapy 68 (3) (2024)
Teresa Attenborough, Kate A Rawlinson, Carmen L Diaz Soria, Kirsty Ambridge, Geetha Sankaranarayanan, Jennie Graham, James A Cotton, Stephen R Doyle, Gabriel Rinaldi, Matthew Berriman
A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife 13 (2024)
Frédéric D Chevalier, Winka LE Clec'h, Matthew Berriman, Timothy J C Anderson
A single locus determines praziquantel response in Schistosoma mansoni . Antimicrobial agents and chemotherapy (2024)
Teresa Attenborough, Kate A Rawlinson, Carmen L Diaz Soria, Kirsty Ambridge, Geetha Sankaranarayanan, Jennie Graham, James A Cotton, Stephen R Doyle, Gabriel Rinaldi, Matthew Berriman
A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife 13 (2024)
Frédéric D Chevalier, Winka LE Clec'h, Matthew Berriman, Timothy J C Anderson
A single locus determines praziquantel response in Schistosoma mansoni . Antimicrobial agents and chemotherapy 68 (3) (2024)
Rebecca Cole, Nancy Holroyd, Alan Tracey, Matthew Berriman, Mark E Viney
The parasitic nematode Strongyloides ratti exists predominantly as populations of long-lived asexual lineages. Nature communications 14 (1) (2023)
Gilda Padalino, Avril Coghlan, Giampaolo Pagliuca, Josephine E Forde-Thomas, Matthew Berriman, Karl F Hoffmann
Using ChEMBL to Complement Schistosome Drug Discovery. Pharmaceutics 15 (5) (2023)
Sarah K Buddenborg, Zhigang Lu, Geetha Sankaranarayan, Stephen R Doyle, Matthew Berriman
The stage- and sex-specific transcriptome of the human parasite Schistosoma mansoni. Scientific data 10 (1) (2023)
Avril Coghlan, Frederick A Partridge, María Adelaida Duque-Correa, Gabriel Rinaldi, Simon Clare, Lisa Seymour, Cordelia Brandt, Tapoka T Mkandawire, Catherine McCarthy, Nancy Holroyd, Marina Nick, Anwen E Brown, Sirapat Tonitiwong, David B Sattelle, Matthew Berriman
A drug repurposing screen for whipworms informed by comparative genomics. PLoS neglected tropical diseases 17 (9) (2023)
John W G Addy, Yaw Bediako, Francis M Ndungu, John Joseph Valetta, Adam J Reid, Jedida Mwacharo, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Jennifer Musyoki, Khadija Said Mohammed, Matthew Berriman, Kevin Marsh, Philip Bejon, Mario Recker, Jean Langhorne
10-year longitudinal study of malaria in children: Insights into acquisition and maintenance of naturally acquired immunity. Wellcome open research 6 (2022)
Stephen R Doyle, Martin Jensen Søe, Peter Nejsum, Martha Betson, Philip J Cooper, Lifei Peng, Xing-Quan Zhu, Ana Lourdes Sanchez, Gabriela Matamoros, Gustavo Adolfo Fontecha Sandoval, Cristina Cutillas, Louis-Albert Tchuem Tchuenté, Zeleke Mekonnen, Shaali M Ame, Harriet Namwanje, Bruno Levecke, Matthew Berriman, Brian Lund Fredensborg, Christian Moliin Outzen Kapel
Population genomics of ancient and modern Trichuris trichiura. Nature communications 13 (1) (2022)
John Joseph Valletta, John W G Addy, Adam J Reid, Francis M Ndungu, Yaw Bediako, Jedida Mwacharo, Khadija Said Mohammed, Jennifer Musyoki, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Matthew Berriman, Philip Bejon, Kevin Marsh, Jean Langhorne, Chris I Newbold, Mario Recker
Individual-level variations in malaria susceptibility and acquisition of clinical protection. Wellcome open research 6 (2022)
María A Duque-Correa, David Goulding, Faye H Rodgers, J Andrew Gillis, Claire Cormie, Kate A Rawlinson, Allison J Bancroft, Hayley M Bennett, Magda E Lotkowska, Adam J Reid, Anneliese O Speak, Paul Scott, Nicholas Redshaw, Charlotte Tolley, Catherine McCarthy, Cordelia Brandt, Catherine Sharpe, Caroline Ridley, Judit Gali Moya, Claudia Martins Carneiro, Tobias Starborg, Kelly S Hayes, Nancy Holroyd, Mandy Sanders, David J Thornton, Richard K Grencis, Matthew Berriman
Defining the early stages of intestinal colonisation by whipworms. Nature communications 13 (1) (2022)
Kevin K Takaki, Francisco J Roca, Gabriele Schramm, Ruud H P Wilbers, Wannaporn Ittiprasert, Paul J Brindley, Gabriel Rinaldi, Matthew Berriman, Lalita Ramakrishnan, Antonio J Pagán
Tumor Necrosis Factor and Schistosoma mansoni egg antigen omega-1 shape distinct aspects of the early egg-induced granulomatous response. PLoS neglected tropical diseases 15 (1) (2021)
Liora Haim-Vilmovsky, Johan Henriksson, Jennifer A Walker, Zhichiao Miao, Eviatar Natan, Gozde Kar, Simon Clare, Jillian L Barlow, Evelina Charidemou, Lira Mamanova, Xi Chen, Valentina Proserpio, Jhuma Pramanik, Steven Woodhouse, Anna V Protasio, Mirjana Efremova, Julian L Griffin, Matthew Berriman, Gordon Dougan, Jasmin Fisher, John C Marioni, Andrew N J McKenzie, Sarah A Teichmann
Mapping Rora expression in resting and activated CD4+ T cells. PloS one 16 (5) (2021)
Natalia Macchiaroli, Matías Preza, Matías Gastón Pérez, Laura Kamenetzky, Marcela Alejandra Cucher, Uriel Koziol, Estela Castillo, Matthew Berriman, Klaus Brehm, Mara Cecilia Rosenzvit
Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro. PLoS neglected tropical diseases 15 (3) (2021)
Rodrigo de Paula Baptista, Yiran Li, Adam Sateriale, Karen L Brooks, Alan Tracey, Mandy J Sanders, Brendan Robert E Ansell, Aaron R Jex, Garrett W Cooper, Ethan D Smith, Rui Xiao, Jennifer E Dumaine, Peter Georgeson, Bernard J Pope, Matthew Berriman, Boris Striepen, James A Cotton, Jessica C Kissinger
Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome research (2021)
John W G Addy, Yaw Bediako, Francis M Ndungu, John Joseph Valetta, Adam J Reid, Jedida Mwacharo, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Jennifer Musyoki, Khadija Said Mohammed, Matthew Berriman, Kevin Marsh, Philip Bejon, Mario Recker, Jean Langhorne
10-year longitudinal study of malaria in children: Insights into acquisition and maintenance of naturally acquired immunity. Wellcome open research 6 (2021)
Duncan J Berger, Thomas Crellen, Poppy H L Lamberton, Fiona Allan, Alan Tracey, Jennifer D Noonan, Narcis B Kabatereine, Edridah M Tukahebwa, Moses Adriko, Nancy Holroyd, Joanne P Webster, Matthew Berriman, James A Cotton
Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration. Nature communications 12 (1) (2021)
John Joseph Valletta, John W G Addy, Adam J Reid, Francis M Ndungu, Yaw Bediako, Jedida Mwacharo, Khadija Said Mohammed, Jennifer Musyoki, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Matthew Berriman, Philip Bejon, Kevin Marsh, Jean Langhorne, Chris I Newbold, Mario Recker
Individual-level variations in malaria susceptibility and acquisition of clinical protection. Wellcome open research 6 (2021)
John Joseph Valletta, John W G Addy, Adam J Reid, Francis M Ndungu, Yaw Bediako, Jedida Mwacharo, Khadija Said Mohammed, Jennifer Musyoki, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Matthew Berriman, Philip Bejon, Kevin Marsh, Jean Langhorne, Chris I Newbold, Mario Recker
Individual-level variations in malaria susceptibility and acquisition of clinical protection. Wellcome open research 6 (2021)
Kathryn Milne, Alasdair Ivens, Adam J Reid, Magda E Lotkowska, Aine O'Toole, Geetha Sankaranarayanan, Diana Munoz Sandoval, Wiebke Nahrendorf, Clement Regnault, Nick J Edwards, Sarah E Silk, Ruth O Payne, Angela M Minassian, Navin Venkatraman, Mandy J Sanders, Adrian Vs Hill, Michael Barrett, Matthew Berriman, Simon J Draper, J Alexandra Rowe, Philip J Spence
Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparum. eLife 10 (2021)
Eerik Aunin, Ulrike Böhme, Damer P Blake, Alexander Dove, Michelle Smith, Craig Corton, Karen Oliver, Emma Betteridge, Michael A Quail, Shane A McCarthy, Jonathan M D Wood, Alan Tracey, James W Torrance, Ying Sims, Kerstin Howe, Richard Challis, Matthew Berriman, Adam J Reid
The complete genome sequence of Eimeria tenella (Tyzzer 1929), a common gut parasite of chickens. Wellcome open research 6 (2021)
John W G Addy, Yaw Bediako, Francis M Ndungu, John Joseph Valetta, Adam J Reid, Jedida Mwacharo, Joyce Mwongeli Ngoi, Joshua Wambua, Edward Otieno, Jennifer Musyoki, Khadija Said Mohammed, Matthew Berriman, Kevin Marsh, Philip Bejon, Mario Recker, Jean Langhorne
10-year longitudinal study of malaria in children: Insights into acquisition and maintenance of naturally acquired immunity. Wellcome open research 6 (2021)
Frederik Van den Broeck, Nicholas J Savill, Hideo Imamura, Mandy Sanders, Ilse Maes, Sinclair Cooper, David Mateus, Marlene Jara, Vanessa Adaui, Jorge Arévalo, Alejandro Llanos-Cuentas, Lineth Garcia, Elisa Cupolillo, Michael A Miles, Matthew Berriman, Achim Schnaufer, James A Cotton, Jean-Claude Dujardin
Ecological divergence and hybridization of Neotropical Leishmania parasites. Proceedings of the National Academy of Sciences of the United States of America 117 (40) (2020)
Caroline Durrant, Elizabeth A Thiele, Nancy Holroyd, Stephen R Doyle, Guillaume Sallé, Alan Tracey, Geetha Sankaranarayanan, Magda E Lotkowska, Hayley M Bennett, Thomas Huckvale, Zahra Abdellah, Ouakou Tchindebet, Mesfin Wossen, Makoy Samuel Yibi Logora, Cheick Oumar Coulibaly, Adam Weiss, Albrecht I Schulte-Hostedde, Jeremy M Foster, Christopher A Cleveland, Michael J Yabsley, Ernesto Ruiz-Tiben, Matthew Berriman, Mark L Eberhard, James A Cotton
Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis. PLoS neglected tropical diseases 14 (11) (2020)
Virginia M Howick, Andrew J C Russell, Tallulah S Andrews, Haynes Heaton, Adam J Reid, Kedar Nath Natrajan, Hellen Butungi, Tom Metcalf, Lisa H Verzier, Julian C Rayner, Matthew Berriman, Jeremy Keith Herren, Oliver Billker, Martin Hemberg, Arthur M Talman, Mara N K Lawniczak
The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle. Science (New York, N.Y.) 365 (6455) (2020)
James A Cotton, Caroline Durrant, Susanne U Franssen, Tesfaye Gelanew, Asrat Hailu, David Mateus, Mandy J Sanders, Matthew Berriman, Petr Volf, Michael A Miles, Matthew Yeo
Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani. PLoS neglected tropical diseases 14 (4) (2020)
Geetha Sankaranarayanan, Avril Coghlan, Patrick Driguez, Magda E Lotkowska, Mandy Sanders, Nancy Holroyd, Alan Tracey, Matthew Berriman, Gabriel Rinaldi
Large CRISPR-Cas-induced deletions in the oxamniquine resistance locus of the human parasite Schistosoma mansoni. Wellcome open research 5 (2020)
Carmen Lidia Diaz Soria, Jayhun Lee, Tracy Chong, Avril Coghlan, Alan Tracey, Matthew D Young, Tallulah S Andrews, Christopher Hall, Bee Ling Ng, Kate A Rawlinson, Stephen R Doyle, Steven Leonard, Zhigang Lu, Hayley M Bennett, Gabriel Rinaldi, Phillip A Newmark, Matthew Berriman
Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni. Nature communications 11 (1) (2020)
Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L Michalski, Michael Paulini, Matthew B Rogers, Laura Teigen, Alan Twaddle, Lonnie R Welch, Matthew Berriman, Julie C Dunning Hotopp, Elodie Ghedin
Sex chromosome evolution in parasitic nematodes of humans. Nature communications 11 (1) (2020)
Stephen R Doyle, Alan Tracey, Roz Laing, Nancy Holroyd, David Bartley, Wojtek Bazant, Helen Beasley, Robin Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D Noonan, Michael Paulini, Michael A Quail, Elizabeth Redman, Faye H Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin L Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S Gilleard, James A Cotton
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm. Communications biology 3 (1) (2020)
Arporn Wangwiwatsin, Anna V Protasio, Shona Wilson, Christian Owusu, Nancy E Holroyd, Mandy J Sanders, Jacqueline Keane, Mike J Doenhoff, Gabriel Rinaldi, Matthew Berriman
Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development. PLoS neglected tropical diseases 14 (5) (2020)
María Eugenia Ancarola, Gabriel Lichtenstein, Johannes Herbig, Nancy E Holroyd, Mara Mariconti, Enrico Brunetti, Matthew Berriman, Krystyna Albrecht, Antonio Marcilla, Mara Cecilia Rosenzvit, Laura Kamenetzky, Klaus Brehm, Marcela Alejandra Cucher
Extracellular non-coding RNA signatures of the metacestode stage of Echinococcus multilocularis. PLoS neglected tropical diseases 14 (11) (2020)
Susanne U Franssen, Caroline Durrant, Olivia Stark, Bettina Moser, Tim Downing, Hideo Imamura, Jean-Claude Dujardin, Mandy J Sanders, Isabel Mauricio, Michael A Miles, Lionel F Schnur, Charles L Jaffe, Abedelmajeed Nasereddin, Henk Schallig, Matthew Yeo, Tapan Bhattacharyya, Mohammad Z Alam, Matthew Berriman, Thierry Wirth, Gabriele Schönian, James A Cotton
Global genome diversity of the Leishmania donovani complex. eLife 9 (2020)
Jipeng Wang, Carlos Paz, Gilda Padalino, Avril Coghlan, Zhigang Lu, Irina Gradinaru, Julie N R Collins, Matthew Berriman, Karl F Hoffmann, James J Collins
Large-scale RNAi screening uncovers therapeutic targets in the parasite Schistosoma mansoni. Science (New York, N.Y.) 369 (6511) (2020)
Eerik Aunin, Ulrike Böhme, Theo Sanderson, Noah D Simons, Tony L Goldberg, Nelson Ting, Colin A Chapman, Chris I Newbold, Matthew Berriman, Adam J Reid
Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys. PLoS pathogens 16 (8) (2020)
Peter D Olson, Alan Tracey, Andrew Baillie, Katherine James, Stephen R Doyle, Sarah K Buddenborg, Faye H Rodgers, Nancy Holroyd, Matthew Berriman
Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection. BMC biology 18 (1) (2020)
Magnus Manske, Ulrike Böhme, Christoph Püthe, Matthew Berriman
GeneDB and Wikidata. Wellcome open research (2019)
Cecile Crosnier, Cordelia Brandt, Gabriel Rinaldi, Catherine McCarthy, Colin Barker, Simon Clare, Matthew Berriman, Gavin J Wright
Systematic screening of 96 Schistosoma mansoni cell-surface and secreted antigens does not identify any strongly protective vaccine candidates in a mouse model of infection. Wellcome open research 4 (2019)
Magnus Manske, Ulrike Böhme, Christoph Püthe, Matthew Berriman
GeneDB and Wikidata. Wellcome open research 4 (2019)
Ulrike Böhme, Thomas Dan Otto, Mandy Sanders, Chris I Newbold, Matthew Berriman
Progression of the canonical reference malaria parasite genome from 2002-2019. Wellcome open research (2019)
Thomas Dan Otto, Sammy A Assefa, Ulrike Böhme, Mandy J Sanders, Dominic Kwiatkowski, null null, Matthew Berriman, Chris I Newbold
Evolutionary analysis of the most polymorphic gene family in falciparum malaria. Wellcome open research 4 (2019)
María A Duque-Correa, Natasha A Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy Patrick Jenkins, Adam J Reid, Emma L Cambridge, Carmen Ballesteros Reviriego, null null, null null, Werner Muller, Cinzia Cantacessi, Gordon Dougan, Richard K Grencis, Matthew Berriman
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection. PLoS pathogens 15 (1) (2019)
Ulrike Böhme, Thomas Dan Otto, Mandy Sanders, Chris I Newbold, Matthew Berriman
Progression of the canonical reference malaria parasite genome from 2002-2019. Wellcome open research 4 (2019)
Wannaporn Ittiprasert, Victoria H Mann, Shannon E Karinshak, Avril Coghlan, Gabriel Rinaldi, Geetha Sankaranarayanan, Apisit Chaidee, Toshihiko Tanno, Chutima Kumkhaek, Pannathee Prangtaworn, Margaret M Mentink-Kane, Christina J Cochran, Patrick Driguez, Nancy Holroyd, Alan Tracey, Rutchanee Rodpai, Bart Everts, Cornelis H Hokke, Karl F Hoffmann, Matthew Berriman, Paul J Brindley
Programmed genome editing of the omega-1 ribonuclease of the blood fluke, Schistosoma mansoni. eLife 8 (2019)
Guillaume Sallé, Stephen R Doyle, J Cortet, J Cabaret, Matthew Berriman, N Holroyd, J A Cotton
The global diversity of Haemonchus contortus is shaped by human intervention and climate. Nature communications 10 (1) (2019)
David Roquis, Aaron Taudt, Kathrin K Geyer, Gilda Padalino, Karl F Hoffmann, Nancy E Holroyd, Matthew Berriman, Benoît Aliaga, Cristian Chaparro, Christoph Grunau, Ronaldo de Carvalho Augusto
Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni. PLoS pathogens 14 (5) (2018)
Steffen Hahnel, Nicolas J Wheeler, Zhigang Lu, Arporn Wangwiwatsin, Paul McVeigh, Aaron Maule, Matthew Berriman, Timothy Day, Paula Ribeiro, Christoph G Grevelding
Tissue-specific transcriptome analyses provide new insights into GPCR signalling in adult Schistosoma mansoni. PLoS pathogens 14 (1) (2018)
Thomas Dan Otto, Ulrike Böhme, Mandy Sanders, Adam Reid, Ellen I Bruske, Craig W Duffy, Peter C Bull, Richard D Pearson, Abdirahman I Abdi, Sandra Dimonte, Lindsay B Stewart, Susana Campino, Mihir Kekre, William L Hamilton, Antoine Claessens, Sarah K Volkman, Daouda Ndiaye, Alfred Amambua-Ngwa, Mahamadou Diakité, Rick M Fairhurst, David J Conway, Matthias Franck, Chris I Newbold, Matthew Berriman
Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres. Wellcome open research 3 (2018)
Natsumi Kanzaki, Isheng Jason Tsai, Ryusei Tanaka, Vicky L Hunt, Dang Liu, Kenji Tsuyama, Yasunobu Maeda, Satoshi Namai, Ryohei Kumagai, Alan Tracey, Nancy Holroyd, Stephen R Doyle, Gavin C Woodruff, Kazunori Murase, Hiromi Kitazume, Cynthia Chai, Allison Akagi, Oishika Panda, Huei-Mien Ke, Frank C Schroeder, John Wang, Matthew Berriman, Paul W Sternberg, Asako Sugimoto, Taisei Kikuchi
Biology and genome of a newly discovered sibling species of Caenorhabditis elegans. Nature communications 9 (1) (2018)
Adam J Reid, Arthur M Talman, Hayley M Bennett, Ana R Gomes, Mandy J Sanders, Christopher J R Illingworth, Oliver Billker, Matthew Berriman, Mara N K Lawniczak
Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites. eLife 7 (2018)
Thomas Dan Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, Mandy Sanders, Samuel O Oyola, Alain Prince Okouga, Larson Boundenga, Eric Willaume, Barthélémy Ngoubangoye, Nancy Diamella Moukodoum, Christophe Paupy, Patrick Durand, Virginie Rougeron, Benjamin Ollomo, François Renaud, Chris Newbold, Matthew Berriman, Franck Prugnolle
Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria. Nature microbiology 3 (6) (2018)
Jing-Wen Lin, Adam J Reid, Deirdre Cunningham, Ulrike Böhme, Irene Tumwine, Sara Keller-Mclaughlin, Mandy Sanders, Matthew Berriman, Jean Langhorne
Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern. Wellcome open research 3 (2018)
Jing-Wen Lin, Adam J Reid, Deirdre Cunningham, Ulrike Böhme, Irene Tumwine, Sara Keller-Mclaughlin, Mandy Sanders, Matthew Berriman, Jean Langhorne
Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern. Wellcome open research (2018)
George R Wendt, Julie Nr Collins, Jimin Pei, Mark S Pearson, Hayley M Bennett, Alex Loukas, Matthew Berriman, Nick V Grishin, James J Collins
Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni. eLife 7 (2018)
Erica M Pasini, Ulrike Böhme, Gavin G Rutledge, Annemarie Voorberg-Van der Wel, Mandy Sanders, Matthew Berriman, Clemens Hm Kocken, Thomas Dan Otto
An improved Plasmodium cynomolgi genome assembly reveals an unexpected methyltransferase gene expansion. Wellcome open research 2 (2017)
Zhigang Lu, Florian Sessler, Nancy Holroyd, Steffen Hahnel, Thomas Quack, Matthew Berriman, Christoph G Grevelding
A gene expression atlas of adult Schistosoma mansoni and their gonads. Scientific data 4 (2017)
Sutas Suttiprapa, Gabriel Rinaldi, Isheng J Tsai, Victoria H Mann, Larisa Dubrovsky, Hong-Bin Yan, Nancy E Holroyd, Thomas Huckvale, Caroline Durrant, Anna V Protasio, Tatiana Pushkarsky, Sergey Iordanskiy, Matthew Berriman, Michael I Bukrinsky, Paul J Brindley
HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni. PLoS pathogens 12 (10) (2016)
Susan Wyllie, Adam J Roberts, Suzanne Norval, Stephen Patterson, Bernardo J Foth, Matthew Berriman, Kevin D Read, Alan H Fairlamb
Activation of Bicyclic Nitro-drugs by a Novel Nitroreductase (NTR2) in Leishmania. PLoS pathogens 12 (11) (2016)
Vicky L Hunt, Isheng J Tsai, Avril Coghlan, Adam J Reid, Nancy Holroyd, Bernardo J Foth, Alan Tracey, James A Cotton, Eleanor J Stanley, Helen Beasley, Hayley M Bennett, Karen Brooks, Bhavana Harsha, Rei Kajitani, Arpita Kulkarni, Dorothee Harbecke, Eiji Nagayasu, Sarah Nichol, Yoshitoshi Ogura, Michael A Quail, Nadine Randle, Dong Xia, Norbert W Brattig, Hanns Soblik, Diogo M Ribeiro, Alejandro Sanchez-Flores, Tetsuya Hayashi, Takehiko Itoh, Dee R Denver, Warwick Grant, Jonathan D Stoltzfus, James B Lok, Haruhiko Murayama, Jonathan Wastling, Adrian Streit, Taisei Kikuchi, Mark Viney, Matthew Berriman
The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature genetics 48 (3) (2016)
William Weir, Paul Capewell, Bernardo Foth, Caroline Clucas, Andrew Pountain, Pieter Steketee, Nicola Veitch, Mathurin Koffi, Thierry de Meeûs, Jacques Kaboré, Mamadou Camara, Anneli Cooper, Andy Tait, Vincent Jamonneau, Bruno Bucheton, Matthew Berriman, Annette MacLeod
Population genomics reveals the origin and asexual evolution of human infective trypanosomes. eLife 5 (2016)
James A Cotton, Sasisekhar Bennuru, Alexandra Grote, Bhavana Harsha, Alan Tracey, Robin Beech, Stephen R Doyle, Matthew Dunn, Julie C Dunning Hotopp, Nancy Holroyd, Taisei Kikuchi, Olivia Lambert, Amruta Mhashilkar, Prudence Mutowo, Nirvana Nursimulu, Jose M C Ribeiro, Matthew B Rogers, Eleanor Stanley, Lakshmipuram S Swapna, Isheng Jason Tsai, Thomas R Unnasch, Denis Voronin, John Parkinson, Thomas B Nutman, Elodie Ghedin, Matthew Berriman, Sara Lustigman
The genome of Onchocerca volvulus, agent of river blindness. Nature microbiology 2 (2016)
Hideo Imamura, Tim Downing, Frederik Van den Broeck, Mandy J Sanders, Suman Rijal, Shyam Sundar, An Mannaert, Manu Vanaerschot, Maya Berg, Géraldine De Muylder, Franck Dumetz, Bart Cuypers, Ilse Maes, Malgorzata Domagalska, Saskia Decuypere, Keshav Rai, Surendra Uranw, Narayan Raj Bhattarai, Basudha Khanal, Vijay Kumar Prajapati, Smriti Sharma, Olivia Stark, Gabriele Schönian, Harry P de Koning, Luca Settimo, Benoit Vanhollebeke, Syamal Roy, Bart Ostyn, Marleen Boelaert, Louis Maes, Matthew Berriman, Jean-Claude Dujardin, James A Cotton
Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. eLife 5 (2016)
Lucy Glover, Sam Alsford, Nicola Baker, Daniel J Turner, Alejandro Sanchez-Flores, Sebastian Hutchinson, Christiane Hertz-Fowler, Matthew Berriman, David Horn
Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes. Nature protocols 10 (1) (2014)