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The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer-promoter communication.

Jonathan P KarrJohn J FerrieRobert Tse Nan TjianXavier Darzacq
Published in: Genes & development (2021)
How distal cis -regulatory elements (e.g., enhancers) communicate with promoters remains an unresolved question of fundamental importance. Although transcription factors and cofactors are known to mediate this communication, the mechanism by which diffusible molecules relay regulatory information from one position to another along the chromosome is a biophysical puzzle-one that needs to be revisited in light of recent data that cannot easily fit into previous solutions. Here we propose a new model that diverges from the textbook enhancer-promoter looping paradigm and offer a synthesis of the literature to make a case for its plausibility, focusing on the coactivator p300.
Keyphrases
  • transcription factor
  • dna binding
  • systematic review
  • genome wide identification
  • minimally invasive
  • dna methylation
  • electronic health record
  • gene expression
  • healthcare
  • big data
  • machine learning
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