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GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.

Hasindu GamaarachchiChun Wai LamGihan JayatilakaHiruna SamarakoonJared T SimpsonMartin A SmithSri Parameswaran
Published in: BMC bioinformatics (2020)
Our work not only demonstrates that complex genomics analyses can be performed on lightweight computing systems, but also benefits High-Performance Computing (HPC). The associated source code for f5c along with GPU optimised ABEA is available at https://github.com/hasindu2008/f5c .
Keyphrases
  • single cell
  • sensitive detection