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Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach.

Ya WangYan YanKelsey N ThompsonSena BaeEmma K AccorsiYancong ZhangJiaxian ShenHera VlamakisErica M HartmannCurtis Huttenhower
Published in: Microbiome (2021)
This study provides a comprehensive evaluation of PMA-seq exploring its quantitative potential in synthetic and complex microbial communities, where the technique was effective for semi-quantitative purposes in simple synthetic communities but provided only qualitative assessments in realistically complex community samples. Video abstract.
Keyphrases
  • microbial community
  • single cell
  • antibiotic resistance genes
  • high resolution
  • healthcare
  • mental health
  • systematic review
  • gene expression
  • risk assessment
  • human health