Curtis Huttenhower (C Huttenhower)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 98

Top Topics

Plasmodium Falciparum

Cardiopulmonary Resuscitation

Histone Deacetylase

Microbial Community

Top Venues

Nature medicine

Communications biology

Nature microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Zhendong Mei, FengLei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric Bruce Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Meredith Yeager, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. Nature medicine 30 (8) (2024)
Nicole D Sonnert, Connor E Rosen, Andrew R Ghazi, Eric A Franzosa, Brianna Duncan-Lowey, Jaime A González-Hernández, John D Huck, Yi Yang, Yile Dai, Tyler A Rice, Mytien T Nguyen, Deguang Song, Yiyun Cao, Anjelica L Martin, Agata A Bielecka, Suzanne Fischer, Changhui Guan, Julia Oh, Curtis Huttenhower, Aaron M Ring, Noah W Palm
A host-microbiota interactome reveals extensive transkingdom connectivity. Nature (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Author Correction: Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology 20 (4) (2024)
Moreno Zolfo, Andrea Silverj, Aitor Blanco-Míguez, Paolo Manghi, Omar Rota-Stabelli, Vitor Heidrich, Joardan Jensen, Sagun Maharjan, Eric A Franzosa, Cristina Menni, Alessia Visconti, Federica Pinto, Matteo Ciciani, Curtis Huttenhower, Anna Cereseto, Francesco Asnicar, Hiroaki Kitano, Takuji Yamada, Nicola Segata
Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples. bioRxiv : the preprint server for biology (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology 20 (4) (2024)
Moreno Zolfo, Andrea Silverj, Aitor Blanco-Míguez, Paolo Manghi, Omar Rota-Stabelli, Vitor Heidrich, Jordan Jensen, Sagun Maharjan, Eric A Franzosa, Cristina Menni, Alessia Visconti, Federica Pinto, Matteo Ciciani, Curtis Huttenhower, Anna Cereseto, Francesco Asnicar, Hiroaki Kitano, Takuji Yamada, Nicola Segata
Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples. bioRxiv : the preprint server for biology (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Author Correction: Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Nicole D Sonnert, Connor E Rosen, Andrew R Ghazi, Eric A Franzosa, Brianna Duncan-Lowey, Jaime A González-Hernández, John D Huck, Yi Yang, Yile Dai, Tyler A Rice, Mytien T Nguyen, Deguang Song, Yiyun Cao, Anjelica L Martin, Agata A Bielecka, Suzanne Fischer, Changhui Guan, Julia Oh, Curtis Huttenhower, Aaron M Ring, Noah W Palm
A host-microbiota interactome reveals extensive transkingdom connectivity. Nature 628 (8006) (2024)
Nicole D Sonnert, Connor E Rosen, Andrew R Ghazi, Eric A Franzosa, Brianna Duncan-Lowey, Jaime A González-Hernández, John D Huck, Yi Yang, Yile Dai, Tyler A Rice, Mytien T Nguyen, Deguang Song, Yiyun Cao, Anjelica L Martin, Agata A Bielecka, Suzanne Fischer, Changhui Guan, Julia Oh, Curtis Huttenhower, Aaron M Ring, Noah W Palm
A host-microbiota interactome reveals extensive transkingdom connectivity. Nature 628 (8006) (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology (2024)
India Brough, Kelsey Thompson, Ciara Latore, Frank Penkava, Chelsea Regan, Claire Pearson, Hui Shi, Anna Ridley, Davide Simone, Lilian Lam, Samuel Bullers, Caroline Moussa, Rachel Feeney, null null, Mohammed H Al-Mossawi, Fiona Powrie, Stephen P Young, Curtis Huttenhower, Paul Bowness
Elevated type-17 cytokines are present in axial spondyloarthritis stool. Discovery immunology 3 (1) (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology 20 (4) (2024)
Moreno Zolfo, Andrea Silverj, Aitor Blanco-Míguez, Paolo Manghi, Omar Rota-Stabelli, Vitor Heidrich, Jordan Jensen, Sagun Maharjan, Eric A Franzosa, Cristina Menni, Alessia Visconti, Federica Pinto, Matteo Ciciani, Curtis Huttenhower, Anna Cereseto, Francesco Asnicar, Hiroaki Kitano, Takuji Yamada, Nicola Segata
Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples. bioRxiv : the preprint server for biology (2024)
Wenjie Ma, Yiqing Wang, Long H Nguyen, Raaj S Mehta, Jane Ha, Amrisha Bhosle, Lauren J Mclver, Mingyang Song, Andrew T Chan, Lisa L Strate, Curtis Huttenhower, Andrew T Chan
Gut microbiome composition and metabolic activity in women with diverticulitis. Nature communications 15 (1) (2024)
Nicole D Sonnert, Connor E Rosen, Andrew R Ghazi, Eric A Franzosa, Brianna Duncan-Lowey, Jaime A González-Hernández, John D Huck, Yi Yang, Yile Dai, Tyler A Rice, Mytien T Nguyen, Deguang Song, Yiyun Cao, Anjelica L Martin, Agata A Bielecka, Suzanne Fischer, Changhui Guan, Julia Oh, Curtis Huttenhower, Aaron M Ring, Noah W Palm
A host-microbiota interactome reveals extensive transkingdom connectivity. Nature 628 (8006) (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Nicole D Sonnert, Connor E Rosen, Andrew R Ghazi, Eric A Franzosa, Brianna Duncan-Lowey, Jaime A González-Hernández, John D Huck, Yi Yang, Yile Dai, Tyler A Rice, Mytien T Nguyen, Deguang Song, Yiyun Cao, Anjelica L Martin, Agata A Bielecka, Suzanne Fischer, Changhui Guan, Julia Oh, Curtis Huttenhower, Aaron M Ring, Noah W Palm
A host-microbiota interactome reveals extensive transkingdom connectivity. Nature 628 (8006) (2024)
Zhendong Mei, FengLei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric Bruce Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Meredith Yeager, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. Nature medicine 30 (8) (2024)
Zhendong Mei, FengLei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric Bruce Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Meredith Yeager, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. Nature medicine (2024)
Hüseyin Anil Gündüz, René Mreches, Julia Moosbauer, Gary Robertson, Xiao-Yin To, Eric A Franzosa, Curtis Huttenhower, Mina Rezaei, Alice Carolyn McHardy, Bernd Bischl, Philipp C Münch, Martin Binder
Optimized model architectures for deep learning on genomic data. Communications biology 7 (1) (2024)
Wenjie Ma, Yiqing Wang, Long H Nguyen, Raaj S Mehta, Jane Ha, Amrisha Bhosle, Lauren J Mclver, Mingyang Song, Andrew T Chan, Lisa L Strate, Curtis Huttenhower, Andrew T Chan
Gut microbiome composition and metabolic activity in women with diverticulitis. Nature communications 15 (1) (2024)
Zhendong Mei, FengLei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric Bruce Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Meredith Yeager, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. Nature medicine (2024)
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Andrew T Chan, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease. Molecular systems biology 20 (4) (2024)
India Brough, Kelsey Thompson, Ciara Latore, Frank Penkava, Chelsea Regan, Claire Pearson, Hui Shi, Anna Ridley, Davide Simone, Lilian Lam, Samuel Bullers, Caroline Moussa, Rachel Feeney, null null, Mohammed H Al-Mossawi, Fiona Powrie, Stephen P Young, Curtis Huttenhower, Paul Bowness
Elevated type-17 cytokines are present in axial spondyloarthritis stool. Discovery immunology 3 (1) (2024)
Kevin S Bonham, Guilherme F Bottino, Shelley Hoeft McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry, Rosa Cano Lorente, null null, Curtis Huttenhower, Muriel M K Bruchhage, Viren D'Sa, Sean Deoni, Vanja Klepac-Ceraj
Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science advances 9 (51) (2023)
Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, Lauren J McIver, Kelsey N Thompson, Moreno Zolfo, Paolo Manghi, Leonard Dubois, Kun D Huang, Andrew Maltez Thomas, William A Nickols, Gianmarco Piccinno, Elisa Piperni, Michal Punčochář, Mireia Valles-Colomer, Adrian Tett, Francesca Giordano, Richard Davies, Jonathan Wolf, Sarah E Berry, Timothy D Spector, Eric A Franzosa, Edoardo Pasolli, Francesco Asnicar, Curtis Huttenhower, Nicola Segata
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. Nature biotechnology (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Tiffany Y Hsu, Etienne Nzabarushimana, Dennis Wong, Chengwei Luo, Robert G Beiko, Morgan G I Langille, Curtis Huttenhower, Long H Nguyen, Eric A Franzosa
Profiling novel lateral gene transfer events in the human microbiome. bioRxiv : the preprint server for biology (2023)
Aaron M Walsh, John Leech, Curtis Huttenhower, Hue Delhomme-Nguyen, Fiona Crispie, Christian Chervaux, Paul D Cotter
Integrated molecular approaches for fermented food microbiome research. FEMS microbiology reviews 47 (2) (2023)
Kevin S Bonham, Guilherme F Bottino, Shelley Hoeft McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry, Rosa Cano Lorente, null null, Curtis Huttenhower, Muriel M K Bruchhage, Viren D'Sa, Sean Deoni, Vanja Klepac-Ceraj
Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science advances 9 (51) (2023)
Jared R Mayers, Jack Varon, Ruixuan R Zhou, Martin Daniel-Ivad, Courtney Beaulieu, Amrisha Bholse, Nathaniel R Glasser, Franziska M Lichtenauer, Julie Ng, Mayra Pinilla Vera, Curtis Huttenhower, Mark A Perrella, Andrew T Chan, Sihai D Zhao, Rebecca M Baron, Emily P Balskus
Identification and targeting of microbial putrescine acetylation in bloodstream infections. bioRxiv : the preprint server for biology (2023)
Raaj S Mehta, Jared R Mayers, Yancong Zhang, Amrisha Bhosle, Nathaniel R Glasser, Long H Nguyen, Wenjie Ma, Sena Bae, Tobyn Branck, Kijun Song, Luke Sebastian, Julian Avila Pacheco, Hyuk-Soo Seo, Andrew T Chan, Sirano Dhe-Paganon, Ashwin N Ananthakrishnan, Eric A Franzosa, Emily P Balskus, Andrew T Chan, Curtis Huttenhower
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease. Nature medicine (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Raaj S Mehta, Jared R Mayers, Yancong Zhang, Amrisha Bhosle, Nathaniel R Glasser, Long H Nguyen, Wenjie Ma, Sena Bae, Tobyn Branck, Kijun Song, Luke Sebastian, Julian Avila Pacheco, Hyuk-Soo Seo, Andrew T Chan, Sirano Dhe-Paganon, Ashwin N Ananthakrishnan, Eric A Franzosa, Emily P Balskus, Andrew T Chan, Curtis Huttenhower
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease. Nature medicine 29 (3) (2023)
Aaron M Walsh, John Leech, Curtis Huttenhower, Hue Delhomme-Nguyen, Fiona Crispie, Christian Chervaux, Paul D Cotter
Integrated molecular approaches for fermented food microbiome research. FEMS microbiology reviews 47 (2) (2023)
Aaron M Walsh, John Leech, Curtis Huttenhower, Hue Delhomme-Nguyen, Fiona Crispie, Christian Chervaux, Paul D Cotter
Integrated molecular approaches for fermented food microbiome research. FEMS microbiology reviews 47 (2) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Kevin S Bonham, Guilherme F Bottino, Shelley Hoeft McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry, Rosa Cano Lorente, null null, Curtis Huttenhower, Muriel M K Bruchhage, Viren D'Sa, Sean Deoni, Vanja Klepac-Ceraj
Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science advances 9 (51) (2023)
Kelsey N Thompson, Kevin S Bonham, Nicholas Edward Ilott, Graham J Britton, Paula Colmenero, Samuel J Bullers, Lauren J McIver, Siyuan Ma, Long H Nguyen, Andrew Filer, India Brough, Claire F Pearson, Caroline Moussa, Vinod Kumar, Lilian H Lam, Matthew A Jackson, April Pawluk, null null, Serafim Kiriakidis, Peter C Taylor, Lucy R Wedderburn, Brian D Marsden, Stephen P Young, Dan R Littman, Jeremiah J Faith, Arthur G Pratt, Paul Bowness, Karim Raza, Fiona M Powrie, Curtis Huttenhower, null null
Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes. Science translational medicine 15 (706) (2023)
Ludwig Geistlinger, Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Clare Grieve, Jennifer Wokaty, Samuel David Gamboa-Tuz, Pratyay Sengupta, Issac Hecht, Aarthi Ravikrishnan, Rafael S Gonçalves, Eric A Franzosa, Karthik Raman, Vincent Carey, Jennifer Beam Dowd, Heidi E Jones, Sean Davis, Nicola Segata, Curtis Huttenhower, Levi Waldron
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nature biotechnology (2023)
Aaron M Walsh, John Leech, Curtis Huttenhower, Hue Delhomme-Nguyen, Fiona Crispie, Christian Chervaux, Paul D Cotter
"Integrated molecular approaches for fermented food microbiome research". FEMS microbiology reviews (2023)
Raaj S Mehta, Jared R Mayers, Yancong Zhang, Amrisha Bhosle, Nathaniel R Glasser, Long H Nguyen, Wenjie Ma, Sena Bae, Tobyn Branck, Kijun Song, Luke Sebastian, Julian Avila Pacheco, Hyuk-Soo Seo, Andrew T Chan, Sirano Dhe-Paganon, Ashwin N Ananthakrishnan, Eric A Franzosa, Emily P Balskus, Andrew T Chan, Curtis Huttenhower
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease. Nature medicine 29 (3) (2023)
Kevin S Bonham, Guilherme F Bottino, Shelley Hoeft McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry, Rosa Cano Lorente, null null, Curtis Huttenhower, Muriel M K Bruchhage, Viren D'Sa, Sean Deoni, Vanja Klepac-Ceraj
Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science advances 9 (51) (2023)
Andrew R Ghazi, Kathleen Sucipto, Ali Rahnavard, Eric A Franzosa, Lauren J McIver, Jason Lloyd-Price, Emma Schwager, George Weingart, Yo Sup Moon, Xochitl C Morgan, Levi Waldron, Curtis Huttenhower
High-sensitivity pattern discovery in large, paired multiomic datasets. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Javiera P Oyarzún, Thomas M Kuntz, Yoann Stussi, Olivia T Karaman, Sophia Vranos, Bridget L Callaghan, Curtis Huttenhower, Joseph E LeDoux, Elizabeth A Phelps
Human threat learning is associated with gut microbiota composition. PNAS nexus 1 (5) (2022)
Javiera P Oyarzún, Thomas M Kuntz, Yoann Stussi, Olivia T Karaman, Sophia Vranos, Bridget L Callaghan, Curtis Huttenhower, Joseph E LeDoux, Elizabeth A Phelps
Human threat learning is associated with gut microbiota composition. PNAS nexus 1 (5) (2022)
Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D D'Agostino, Minghao Zhang, Eunha Kim, Eric A Franzosa, Julian Avila Pacheco, Jordan E Bisanz, Christopher K Rakowski, Hera Vlamakis, Ramnik J Xavier, Peter J Turnbaugh, Randy S Longman, Michael R Krout, Andrew T Chan, Fraydoon Rastinejad, Curtis Huttenhower, Jun R Huh, A Sloan Devlin
Human gut bacteria produce Τ Η 17-modulating bile acid metabolites. Nature 603 (7903) (2022)
Yancong Zhang, Amrisha Bhosle, Sena Bae, Lauren J McIver, Gleb Pishchany, Emma K Accorsi, Kelsey N Thompson, Cesar Arze, Ya Wang, Ayshwarya Subramanian, Sean M Kearney, April Pawluk, Damian Rafal Plichta, Gholamali Rahnavard, Afrah Shafquat, Ramnik J Xavier, Hera Vlamakis, Wendy S Garrett, Andy Krueger, Curtis Huttenhower, Eric A Franzosa
Discovery of bioactive microbial gene products in inflammatory bowel disease. Nature 606 (7915) (2022)
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Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response. Science (New York, N.Y.) 374 (6575) (2021)
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