A reusable neural network pipeline for unidirectional fiber segmentation.
Alexandre Fioravante de SiqueiraDaniela M UshizimaStéfan J van der WaltPublished in: Scientific data (2022)
Fiber-reinforced ceramic-matrix composites are advanced, temperature resistant materials with applications in aerospace engineering. Their analysis involves the detection and separation of fibers, embedded in a fiber bed, from an imaged sample. Currently, this is mostly done using semi-supervised techniques. Here, we present an open, automated computational pipeline to detect fibers from a tomographically reconstructed X-ray volume. We apply our pipeline to a non-trivial dataset by Larson et al. To separate the fibers in these samples, we tested four different architectures of convolutional neural networks. When comparing our neural network approach to a semi-supervised one, we obtained Dice and Matthews coefficients reaching up to 98%, showing that these automated approaches can match human-supervised methods, in some cases separating fibers that human-curated algorithms could not find. The software written for this project is open source, released under a permissive license, and can be freely adapted and re-used in other domains.
Keyphrases
- neural network
- machine learning
- deep learning
- convolutional neural network
- endothelial cells
- induced pluripotent stem cells
- pluripotent stem cells
- high throughput
- high resolution
- computed tomography
- mass spectrometry
- liquid chromatography
- gold nanoparticles
- data analysis
- reduced graphene oxide
- real time pcr
- single cell