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Assessing SIRAH's Capability to Simulate Intrinsically Disordered Proteins and Peptides.

Florencia KleinExequiel E BarreraSergio Pantano
Published in: Journal of chemical theory and computation (2021)
The challenges posed by intrinsically disordered proteins (IDPs) to atomistic and coarse-grained (CG) simulations are boosting efforts to develop and reparametrize current force fields. An assessment of the dynamical behavior of IDPs' and unstructured peptides with the CG SIRAH force field suggests that the current version achieves a fair description of IDPs' conformational flexibility. Moreover, we found a remarkable capability to capture the effect of point mutations in loosely structured peptides.
Keyphrases
  • molecular dynamics
  • molecular dynamics simulations
  • single molecule
  • density functional theory
  • amino acid