Germline variability and tumor expression level of ribosomal protein gene RPL28 are associated with survival of metastatic colorectal cancer patients.
Adrien LabrietÉric LévesqueErika CecchinElena De MattiaLyne VilleneuveMichèle RouleauDerek JonkerFélix CoutureDavid SimonyanEric P AllainAngela BuonadonnaMario D'AndreaGiuseppe ToffoliChantal GuillemettePublished in: Scientific reports (2019)
This study investigated the potential of single nucleotide polymorphisms as predictors of survival in two cohorts comprising 417 metastatic colorectal cancer (mCRC) patients treated with the FOLFIRI (folinic acid, 5-fluorouracil and irinotecan) regimen. The rs4806668G > T of the ribosomal protein gene RPL28 was associated with shorter progression-free survival and overall survival by 5 and 9 months (P = 0.002), with hazard ratios of 3.36 (P < 0.001) and 3.07 (P = 0.002), respectively. The rs4806668T allele was associated with an increased RPL28 expression in transverse normal colon tissues (n = 246, P = 0.007). RPL28 expression was higher in colorectal tumors compared to paired normal tissues by up to 124% (P < 0.001) in three independent datasets. Metastatic cases with highest RPL28 tumor expression had a reduced survival in two datasets (n = 88, P = 0.009 and n = 56, P = 0.009). High RPL28 was further associated with changes in immunoglobulin and extracellular matrix pathways. Repression of RPL28 reduced proliferation by 1.4-fold to 5.6-fold (P < 0.05) in colon cancer HCT116 and HT-29 cells. Our findings suggest that the ribosomal RPL28 protein may influence mCRC outcome.
Keyphrases
- free survival
- poor prognosis
- binding protein
- extracellular matrix
- metastatic colorectal cancer
- squamous cell carcinoma
- small cell lung cancer
- long non coding rna
- protein protein
- signaling pathway
- copy number
- genome wide
- rna seq
- mass spectrometry
- dna damage
- high resolution
- single molecule
- single cell
- pi k akt
- endoplasmic reticulum stress
- transcription factor