Microbial Abundances Retrieved from Sequencing data-automated NCBI Taxonomy (MARS): a pipeline to create relative microbial abundance data for the Microbiome Modelling Toolbox and utilizing homosynonyms for efficient mapping to resources.

Tim HulshofBram NapFilippo MartinelliInes Thiele

Published in: Bioinformatics advances (2024)

MARS is implemented in Python. It can be found as an interactive application here: https://mars-pipeline.streamlit.app/along with a detailed documentation here: https://github.com/ThieleLab/mars-pipeline.

Keyphrases

electronic health record
microbial community
big data
machine learning
deep learning
high throughput
antibiotic resistance genes
data analysis
artificial intelligence