Ines Thiele

ResearcherID Scopus Author ID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 32

Top Venues

Nature microbiology

Gut microbes

Nature biotechnology

International journal of molecular sciences

National University of Ireland, Galway

University of California, San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National University of Ireland, Galway Feb 01 2019

Ireland

Professor :: Discipline of Microbiology

National University of Ireland, Galway

Ireland

Personal Professor :: School of Medicine

University of Luxembourg

Luxembourg

Associate Professor in Systems Biomedicine :: Luxembourg Centre for Systems Biomedicine

University of Iceland

Iceland

Associate Professor in Bioengineering :: Faculty of Industrial Engineering, Mechanical Engineering and Computer Science

University of Iceland

Iceland

Assistant Professor in Bioengineering :: Faculty of Industrial Engineering, Mechanical Engineering and Computer Science

Education History

University of California, San Diego

United States

PHD :: Bioengineering

Ecole Superieure de Biotechnology

France

MSC

Publications

Heinz-Peter Nasheuer, Anna Marie Meaney, Timothy Hulshoff, Ines Thiele, Nichodemus O Onwubiko
Replication Protein A, the Main Eukaryotic Single-Stranded DNA Binding Protein, a Focal Point in Cellular DNA Metabolism. International journal of molecular sciences 25 (1) (2024)
Filippo Martinelli, Ines Thiele
Microbial metabolism marvels: a comprehensive review of microbial drug transformation capabilities. Gut microbes 16 (1) (2024)
Filippo Martinelli, Ines Thiele
Microbial metabolism marvels: a comprehensive review of microbial drug transformation capabilities. Gut microbes 16 (1) (2024)
Tim Hulshof, Bram Nap, Filippo Martinelli, Ines Thiele
Microbial Abundances Retrieved from Sequencing data-automated NCBI Taxonomy (MARS): a pipeline to create relative microbial abundance data for the Microbiome Modelling Toolbox and utilizing homosynonyms for efficient mapping to resources. Bioinformatics advances 4 (1) (2024)
Tim Hulshof, Bram Nap, Filippo Martinelli, Ines Thiele
Microbial Abundances Retrieved from Sequencing data-automated NCBI Taxonomy (MARS): a pipeline to create relative microbial abundance data for the Microbiome Modelling Toolbox and utilizing homosynonyms for efficient mapping to resources. Bioinformatics advances 4 (1) (2024)
Filippo Martinelli, Ines Thiele
Microbial metabolism marvels: a comprehensive review of microbial drug transformation capabilities. Gut microbes 16 (1) (2024)
Heinz-Peter Nasheuer, Anna Marie Meaney, Timothy Hulshoff, Ines Thiele, Nichodemus O Onwubiko
Replication Protein A, the Main Eukaryotic Single-Stranded DNA Binding Protein, a Focal Point in Cellular DNA Metabolism. International journal of molecular sciences 25 (1) (2024)
Heinz-Peter Nasheuer, Anna Marie Meaney, Timothy Hulshoff, Ines Thiele, Nichodemus O Onwubiko
Replication Protein A, the Main Eukaryotic Single-Stranded DNA Binding Protein, a Focal Point in Cellular DNA Metabolism. International journal of molecular sciences 25 (1) (2024)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
Almut Heinken, Johannes Hertel, Geeta Acharya, Dmitry A Ravcheev, Malgorzata Nyga, Onyedika Emmanuel Okpala, Marcus Hogan, Stefanía Magnúsdóttir, Filippo Martinelli, Bram Nap, German Andres Preciat Gonzalez, Janaka N Edirisinghe, Christopher S Henry, Ronan M T Fleming, Ines Thiele
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine. Nature biotechnology (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
Almut Heinken, Timothy Otto Hulshof, Bram Nap, Filippo Martinelli, Arianna Basile, Amy O'Brolchain, Neil Francis O'Sullivan, Celine Gallagher, Eimer Magee, Francesca McDonagh, Ian Lalor, Maeve Bergin, Phoebe Evans, Rachel Daly, Ronan Farrell, Rose Marie Delaney, Saoirse Hill, Saoirse Roisin McAuliffe, Trevor Kilgannon, Ronan M T Fleming, Cyrille C Thinnes, Ines Thiele
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites. bioRxiv : the preprint server for biology (2023)
Ashley van der Spek, Isobel D Stewart, Brigitte Kühnel, Maik Pietzner, Tahani Alshehri, Friederike Gauß, Pirro G Hysi, Siamak MahmoudianDehkordi, Almut Heinken, Annemarie I Luik, Karl-Heinz Ladwig, Gabi Kastenmüller, Cristina Menni, Johannes Hertel, Mohammad Arfan Ikram, Renée de Mutsert, Karsten Suhre, Christian Gieger, Konstantin Strauch, Henry Völzke, Thomas Meitinger, Massimo Mangino, Antonia Flaquer, Melanie Waldenberger, Annette Peters, Ines Thiele, Rima Kaddurah-Daouk, Boadie W Dunlop, Frits R Rosendaal, Nicholas J Wareham, Tim D Spector, Sonja Kunze, Hans Jörgen Grabe, Dennis O Mook-Kanamori, Claudia Langenberg, Cornelia M Van Duijn, Ivana Nedeljković
Circulating metabolites modulated by diet are associated with depression. Molecular psychiatry (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
Tim Hensen, Daniel Fässler, Liam O'Mahony, Werner C Albrich, Beatrice Barda, Christian Garzoni, Gian-Reto Kleger, Urs Pietsch, Noémie Suh, Johannes Hertel, Ines Thiele
The Effects of Hospitalisation on the Serum Metabolome in COVID-19 Patients. Metabolites 13 (8) (2023)
Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro, Ines Thiele
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics. Gut microbes 15 (1) (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
Ronan M T Fleming, Hulda S Haraldsdottir, Le Hoai Minh, Phan Tu Vuong, Thomas Hankemeier, Ines Thiele
Cardinality optimization in constraint-based modelling: application to human metabolism. Bioinformatics (Oxford, England) 39 (9) (2023)
Almut Heinken, Johannes Hertel, Geeta Acharya, Dmitry A Ravcheev, Malgorzata Nyga, Onyedika Emmanuel Okpala, Marcus Hogan, Stefanía Magnúsdóttir, Filippo Martinelli, Bram Nap, German Andres Preciat Gonzalez, Janaka N Edirisinghe, Christopher S Henry, Ronan M T Fleming, Ines Thiele
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine. Nature biotechnology (2023)
William F Kindschuh, Federico Baldini, Martin C Liu, Jingqiu Liao, Yoli Meydan, Harry H Lee, Almut Heinken, Ines Thiele, Christoph A Thaiss, Maayan Levy, Tal Korem
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature microbiology 8 (2) (2023)
Ines Thiele, German Preciat, Ronan M T Fleming
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions. Bioinformatics (Oxford, England) 38 (20) (2022)
Johannes Hertel, Daniel Fässler, Almut Heinken, Frank Ulrich Weiss, Malte Christoph Rühlemann, Corinna Bang, Andre Franke, Kathrin Budde, Ann-Kristin Henning, Astrid Petersmann, Linus Völker, Henry Völzke, Ines Thiele, Hans Jörgen Grabe, Markus M Lerch, Matthias Nauck, Nele Friedrich, Fabian Frost
NMR Metabolomics Reveal Urine Markers of Microbiome Diversity and Identify Benzoate Metabolism as a Mediator between High Microbial Alpha Diversity and Metabolic Health. Metabolites 12 (4) (2022)
Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike K Aurich, Ronan M T Fleming
Personalized whole-body models integrate metabolism, physiology, and the gut microbiome. Molecular systems biology 16 (5) (2021)
Almut Heinken, Johannes Hertel, Ines Thiele
Metabolic modelling reveals broad changes in gut microbial metabolism in inflammatory bowel disease patients with dysbiosis. NPJ systems biology and applications 7 (1) (2021)
Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS computational biology 17 (8) (2021)
Marouen Ben Guebila, Ines Thiele
Predicting gastrointestinal drug effects using contextualized metabolic models. PLoS computational biology 15 (6) (2019)
Alice S Chen-Plotkin, Roger Albin, Roy Alcalay, Debra Babcock, Vikram Bajaj, Dubois Bowman, Alex Buko, Jesse Cedarbaum, Daniel Chelsky, Mark R Cookson, Ted M Dawson, Richard B Dewey, Tatiana M Foroud, Mark Frasier, Dwight German, Katrina Gwinn, Xuemei Huang, Catherine Kopil, Thomas Kremer, Shirley Lasch, Kenneth Marek, Jarrod A Marto, Kalpana M Merchant, Brit Mollenhauer, Anna Naito, Judith A Potashkin, Alyssa Reimer, Liana S Rosenthal, Rachel Saunders-Pullman, Clemens R Scherzer, Todd Sherer, Andrew Singleton, Margaret Sutherland, Ines Thiele, Marcel van der Brug, Kendall Van Keuren-Jensen, David E Vaillancourt, David Walt, Andrew West, Jing Zhang
Finding useful biomarkers for Parkinson's disease. Science translational medicine 10 (454) (2019)
Almut Heinken, Dmitry A Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M T Fleming, Ines Thiele
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease. Microbiome 7 (1) (2019)
Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger, Nathan Mih, Francesco Gatto, Avlant Nilsson, German Andres Preciat Gonzalez, Maike Kathrin Aurich, Andreas Prlić, Anand Sastry, Anna D Danielsdottir, Almut Heinken, Alberto Noronha, Peter W Rose, Stephen K Burley, Ronan M T Fleming, Jens B Nielsen, Ines Thiele, Bernhard O Palsson
Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature biotechnology 36 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ines Thiele