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Changing Fates of the Substrate Radicals Generated in the Active Sites of the B 12 -Dependent Radical SAM Enzymes OxsB and AlsB.

Yu-Hsuan LeeYu-Cheng YehPo-Hsun FanAoshu ZhongMark W RuszczyckyHung-Wen Liu
Published in: Journal of the American Chemical Society (2023)
OxsB is a B 12 -dependent radical SAM enzyme that catalyzes the oxidative ring contraction of 2'-deoxyadenosine 5'-phosphate to the dehydrogenated, oxetane containing precursor of oxetanocin A phosphate. AlsB is a homologue of OxsB that participates in a similar reaction during the biosynthesis of albucidin. Herein, OxsB and AlsB are shown to also catalyze radical mediated, stereoselective C2'-methylation of 2'-deoxyadenosine monophosphate. This reaction proceeds with inversion of configuration such that the resulting product also possesses a C2' hydrogen atom available for abstraction. However, in contrast to methylation, subsequent rounds of catalysis result in C-C dehydrogenation of the newly added methyl group to yield a 2'-methylidene followed by radical addition of a 5'-deoxyadenosyl moiety to produce a heterodimer. These observations expand the scope of reactions catalyzed by B 12 -dependent radical SAM enzymes and emphasize the susceptibility of radical intermediates to bifurcation along different reaction pathways even within the highly organized active site of an enzyme.
Keyphrases
  • dna methylation
  • magnetic resonance imaging
  • magnetic resonance
  • gene expression
  • computed tomography
  • contrast enhanced
  • molecular dynamics
  • room temperature
  • structural basis