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The BioRECIPE Knowledge Representation Format.

Emilee HoltzappleGaoxiang ZhouHaomiao LuoDifei TangNiloofar ArazkhaniCasey HansenCheryl A TelmerNatasa Miskov-Zivanov
Published in: ACS synthetic biology (2024)
The BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability, Preserving, and Execution) knowledge representation format was introduced to standardize and facilitate human-machine interaction while creating, verifying, evaluating, curating, and expanding executable models of intra- and intercellular signaling. This format allows a human user to easily preview and modify any model component, while it is at the same time readable by machines and can be processed by a suite of model development and analysis tools. The BioRECIPE format is compatible with multiple representation formats, natural language processing tools, modeling tools, and databases that are used by the systems and synthetic biology communities.
Keyphrases
  • endothelial cells
  • healthcare
  • pluripotent stem cells
  • neural network
  • autism spectrum disorder
  • deep learning
  • cell adhesion
  • data analysis