Discovery of senolytics using machine learning.
Vanessa Smer-BarretoAndrea QuintanillaRichard J R ElliottJohn C DawsonJiugeng SunVíctor M CampaÁlvaro Lorente-MacíasAsier Unciti-BrocetaNeil O CarragherJuan Carlos AcostaDiego A OyarzúnPublished in: Nature communications (2023)
Cellular senescence is a stress response involved in ageing and diverse disease processes including cancer, type-2 diabetes, osteoarthritis and viral infection. Despite growing interest in targeted elimination of senescent cells, only few senolytics are known due to the lack of well-characterised molecular targets. Here, we report the discovery of three senolytics using cost-effective machine learning algorithms trained solely on published data. We computationally screened various chemical libraries and validated the senolytic action of ginkgetin, periplocin and oleandrin in human cell lines under various modalities of senescence. The compounds have potency comparable to known senolytics, and we show that oleandrin has improved potency over its target as compared to best-in-class alternatives. Our approach led to several hundred-fold reduction in drug screening costs and demonstrates that artificial intelligence can take maximum advantage of small and heterogeneous drug screening data, paving the way for new open science approaches to early-stage drug discovery.
Keyphrases
- machine learning
- artificial intelligence
- big data
- endothelial cells
- drug discovery
- type diabetes
- early stage
- deep learning
- small molecule
- dna damage
- induced apoptosis
- electronic health record
- minimally invasive
- papillary thyroid
- high throughput
- public health
- rheumatoid arthritis
- stress induced
- cancer therapy
- knee osteoarthritis
- cardiovascular disease
- drug induced
- cell cycle arrest
- insulin resistance
- squamous cell carcinoma
- induced pluripotent stem cells
- systematic review
- adipose tissue
- data analysis
- young adults
- cell death