Impact of lipid binding on the tertiary structure and allergenic potential of Jug r 3, the non-specific lipid transfer protein from walnut.
Paweł DubielaRebecca Del ConteFrancesca CantiniTomasz BorowskiRoberta AinaChristian RadauerMerima BublinKarin Hoffmann SommergruberStefano AlessandriPublished in: Scientific reports (2019)
Plant non-specific lipid transfer proteins type 1 (nsLTP1) are small basic proteins with a hydrophobic cavity able to host a number of different ligands: i.e. fatty acids, fatty acyl-CoA, phospholipids, glycolipids, and hydroxylated fatty acids. However, ligand binding specificity differs among nsLTPs. Within this protein family, Jug r 3 from walnut has been identified as a major allergen. So far, data on the structural characterization of Jug r 3 and its lipid binding capacity are lacking. We report the results from a fluorescence-based ligand-binding assay and ligand-based NMR experiments, to study the binding interactions between Jug r 3 and the 18-carbon monounsaturated oleic acid. Furthermore, protein-based NMR experiments were employed to detect the oleate binding site of Jug r 3. The NMR data were used to dock the oleate molecule into the structural model of Jug r 3. Finally, the impact of the interaction on the allergenic potential of Jug r 3 was investigated by IgE ELISA with 6 sera from walnut allergic patients. Our data corroborate the hypothesis of direct impact of food-derived matrix on the IgE reactivity of nsLTPs.
Keyphrases
- fatty acid
- binding protein
- magnetic resonance
- electronic health record
- high resolution
- end stage renal disease
- big data
- protein protein
- solid state
- newly diagnosed
- human health
- amino acid
- dna binding
- chronic kidney disease
- ejection fraction
- peritoneal dialysis
- high throughput
- data analysis
- patient reported outcomes
- prognostic factors
- machine learning
- risk assessment
- ionic liquid
- atomic force microscopy
- single cell
- deep learning
- artificial intelligence
- single molecule
- atopic dermatitis
- quantum dots