PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning.

Lummy Maria Oliveira MonteiroJoão Pedro SaraivaRodolfo Brizola ToscanPeter F StadlerRafael Silva-RochaUlisses Nunes da Rocha

Published in: Environmental microbiome (2022)

PredicTF demonstrated high accuracy in predicting transcription factors in model organisms. We prepared the pipeline to be easily implemented in studies profiling TFs using (meta)genomes and (meta)transcriptomes. PredicTF is an open-source software available at https://github.com/mdsufz/PredicTF .

Keyphrases

transcription factor
deep learning
single cell
dna binding
artificial intelligence
genome wide identification
convolutional neural network
gram negative
machine learning
data analysis
multidrug resistant