Ulisses Nunes da Rocha (Ulisses N da Rocha, Ulisses Rocha)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 38

Top Venues

mSystems

Microorganisms

Molecular ecology resources

Microbiology spectrum

Helmholtz Centre for Environmental Research

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Helmholtz Centre for Environmental Research Mar 15 2017

Germany

Microbial Systems Data Science team leader :: Environmental Microbiology

Publications

Nafi'u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Nunes da Rocha
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Microbiology spectrum 12 (3) (2024)
Nafi'u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Nunes da Rocha
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Microbiology spectrum (2024)
Nafi'u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Nunes da Rocha
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Microbiology spectrum 12 (3) (2024)
Emine Gozde Ozbayram, Sabine Kleinsteuber, Heike Sträuber, Bruna Grosch Schroeder, Ulisses Nunes da Rocha, Felipe Borim Corrêa, Hauke Harms, Marcell Nikolausz
Three-domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments. Environmental microbiology reports 16 (4) (2024)
Nafi'u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Nunes da Rocha
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Microbiology spectrum 12 (3) (2024)
Emine Gozde Ozbayram, Sabine Kleinsteuber, Heike Sträuber, Bruna Grosch Schroeder, Ulisses Nunes da Rocha, Felipe Borim Corrêa, Hauke Harms, Marcell Nikolausz
Three-domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments. Environmental microbiology reports 16 (4) (2024)
Nafi'u Abdulkadir, João Pedro Saraiva, Florian Schattenberg, Rodolfo Brizola Toscan, Felipe Borim Correa, Hauke Harms, Susann Müller, Ulisses Nunes da Rocha
Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge. Microorganisms 11 (1) (2023)
Ulisses Nunes da Rocha, Jonas Coelho Kasmanas, René Kallies, Joao Pedro Saraiva, Rodolfo Brizola Toscan, Polonca Štefanič, Marcos Fleming Bicalho, Felipe Borim Correa, Merve Nida Baştürk, Efthymios Fousekis, Luiz Miguel Viana Barbosa, Julia Plewka, Alexander J Probst, Petr Baldrian, Peter F Stadler, null null
MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Molecular ecology resources (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems 8 (1) (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems 8 (1) (2023)
Fatma Chafra, Felipe Borim Correa, Faith Oni, Özlen Konu Karakayalı, Peter F Stadler, Ulisses Nunes da Rocha
StandEnA: a customizable workflow for standardized annotation and generating a presence-absence matrix of proteins. Bioinformatics advances 3 (1) (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems 8 (1) (2023)
Joao Pedro Saraiva, Alexander Bartholomäus, Rodolfo Brizola Toscan, Petr Baldrian, Ulisses Nunes da Rocha
Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes. Molecular ecology resources (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems 8 (1) (2023)
Nafi'u Abdulkadir, João Pedro Saraiva, Florian Schattenberg, Rodolfo Brizola Toscan, Felipe Borim Correa, Hauke Harms, Susann Müller, Ulisses Nunes da Rocha
Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge. Microorganisms 11 (1) (2023)
Sandra Godinho Silva, Masun Nabhan Homsi, Tina Keller-Costa, Ulisses Nunes da Rocha, Rodrigo Costa
Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon. mSystems (2023)
René Kallies, Die Hu, Nafi'u Abdulkadir, Michael Schloter, Ulisses Nunes da Rocha
Identification of Huge Phages from Wastewater Metagenomes. Viruses 15 (12) (2023)
René Kallies, Die Hu, Nafi'u Abdulkadir, Michael Schloter, Ulisses Nunes da Rocha
Identification of Huge Phages from Wastewater Metagenomes. Viruses 15 (12) (2023)
René Kallies, Die Hu, Nafi'u Abdulkadir, Michael Schloter, Ulisses Nunes da Rocha
Identification of Huge Phages from Wastewater Metagenomes. Viruses 15 (12) (2023)
Anh Vu Le, Tomáš Větrovský, Denis Baručić, João Pedro Saraiva, Priscila Thiago Dobbler, Petr Kohout, Martin Pospíšek, Ulisses Nunes da Rocha, Jiří Kléma, Petr Baldrian
Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns. Molecular ecology resources (2023)
Nafi'u Abdulkadir, João Pedro Saraiva, Florian Schattenberg, Rodolfo Brizola Toscan, Felipe Borim Correa, Hauke Harms, Susann Müller, Ulisses Nunes da Rocha
Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge. Microorganisms 11 (1) (2023)
Joao Pedro Saraiva, Alexander Bartholomäus, Rodolfo Brizola Toscan, Petr Baldrian, Ulisses Nunes da Rocha
Recovery of 197 Eukaryotic bins reveals major challenges for Eukaryote genome reconstruction from terrestrial metagenomes. Molecular ecology resources (2023)
Nafi'u Abdulkadir, João Pedro Saraiva, Florian Schattenberg, Rodolfo Brizola Toscan, Felipe Borim Correa, Hauke Harms, Susann Müller, Ulisses Nunes da Rocha
Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge. Microorganisms 11 (1) (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems 8 (1) (2023)
Phillipe M Rosado, Pedro M Cardoso, João G Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel Silva Peixoto
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host. mSystems (2023)
Bruna Grosch Schroeder, Washington Logroño, Ulisses Nunes da Rocha, Hauke Harms, Marcell Nikolausz
Enrichment of Anaerobic Microbial Communities from Midgut and Hindgut of Sun Beetle Larvae ( Pachnoda marginata ) on Wheat Straw: Effect of Inoculum Preparation. Microorganisms 10 (4) (2022)
Nelson Khan, Rodolfo Brizola Toscan, Accadius Lunayo, Benson Wamalwa, Edward Muge, Francis J Mulaa, René Kallies, Hauke Harms, Lukas Y Wick, Ulisses Nunes da Rocha
Draft Genome Sequences of Two Sphingobium Species Associated with Hexachlorocyclohexane (HCH) Degradation Isolated from an HCH-Contaminated Soil. Microbiology resource announcements 11 (3) (2022)
Rubén López-Mondéjar, Vojtěch Tláskal, Ulisses Nunes da Rocha, Petr Baldrian
Global Distribution of Carbohydrate Utilization Potential in the Prokaryotic Tree of Life. mSystems (2022)
Rosiana Bertê, Gustavo Manoel Teixeira, João Paulo de Oliveira, Maria Luiza Abreu Nicoletto, Daniel Vieira da Silva, Guilherme Gonçalves de Godoy, Danilo Sipoli Sanches, Juliano Tadeu Vilela Resende, Ulisses de Padua Pereira, Ulisses Nunes da Rocha, Admilton Gonçalves de Oliveira Junior
Genome Mining Reveals High Biosynthetic Potential of Biocontrol Agent Bacillus velezensis B.BV10. Genes 13 (11) (2022)
Robson P Bonidia, Anderson P Avila Santos, Breno L S de Almeida, Peter F Stadler, Ulisses Nunes da Rocha, Danilo S Sanches, André Carlos Ponce de Leon Ferreira de Carvalho
Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy. Entropy (Basel, Switzerland) 24 (10) (2022)
Bin Liu, Heike Sträuber, João Saraiva, Hauke Harms, Sandra Godinho Silva, Jonas Coelho Kasmanas, Sabine Kleinsteuber, Ulisses Nunes da Rocha
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture. Microbiome 10 (1) (2022)
Lummy Maria Oliveira Monteiro, João Pedro Saraiva, Rodolfo Brizola Toscan, Peter F Stadler, Rafael Silva-Rocha, Ulisses Nunes da Rocha
PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning. Environmental microbiome 17 (1) (2022)
Erin E Nuccio, Nhu H Nguyen, Ulisses Nunes da Rocha, Xavier Mayali, Jeremy Bougoure, Peter K Weber, Eoin L Brodie, Mary Firestone, Jennifer Pett-Ridge
Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil. ISME communications 1 (1) (2021)
Joao Pedro Saraiva, Anja Worrich, Canan Karakoç, Rene Kallies, Antonis Chatzinotas, Florian Centler, Ulisses Nunes da Rocha
Mining Synergistic Microbial Interactions: A Roadmap on How to Integrate Multi-Omics Data. Microorganisms 9 (4) (2021)
João Pedro Saraiva, Alexander Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter F Stadler, Oscar Dias, Ulisses Nunes da Rocha
OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes. Life science alliance 4 (12) (2021)
Nelson Khan, Rodolfo Brizola Toscan, Accadius Lunayo, Benson Wamalwa, Edward Muge, Francis J Mulaa, René Kallies, Hauke Harms, Lukas Y Wick, Ulisses Nunes da Rocha
Draft Genome Sequence of Fusarium equiseti K3, a Fungal Species Isolated from Hexachlorocyclohexane-Contaminated Soil. Microbiology resource announcements 10 (47) (2021)
Erin E Nuccio, Nhu H Nguyen, Ulisses Nunes da Rocha, Xavier Mayali, Jeremy Bougoure, Peter K Weber, Eoin L Brodie, Mary Firestone, Jennifer Pett-Ridge
Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil. ISME communications 1 (1) (2021)
Vanessa Oliveira, Ana Rita Moura Polónia, Daniel Francis Richard Cleary, Yusheng M Huang, Nicole Joy de Voogd, Ulisses Nunes da Rocha, Newton Carlos Marcial Gomes
Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification. Molecular ecology resources 21 (1) (2020)

Ulisses Nunes da Rocha.css-eqlu8i{font-size:small;padding-left:4px;} (Ulisses N da Rocha, Ulisses Rocha)

Publication Activity (10 Years)

Top Topics

Top Venues

Ulisses Nunes da Rocha (Ulisses N da Rocha, Ulisses Rocha)