Radiogenomics-based cancer prognosis in colorectal cancer.
Bogdan BadicMathieu HattStéphanie DurandCatherine Le Jossic-CorcosBrigitte SimonDimitris VisvikisLaurent CorcosPublished in: Scientific reports (2019)
Radiogenomics aims at investigating the relationship between imaging radiomic features and gene expression alterations. This study addressed the potential prognostic complementary value of contrast enhanced computed tomography (CE-CT) radiomic features and gene expression data in primary colorectal cancers (CRC). Sixty-four patients underwent CT scans and radiomic features were extracted from the delineated tumor volume. Gene expression analysis of a small set of genes, previously identified as relevant for CRC, was conducted on surgical samples from the same tumors. The relationships between radiomic and gene expression data was assessed using the Kruskal-Wallis test. Multiple testing was not performed, as this was a pilot study. Cox regression was used to identify variables related to overall survival (OS) and progression free survival (PFS). ABCC2 gene expression was correlated with N (p = 0.016) and M stages (p = 0.022). Expression changes of ABCC2, CD166, CDKNV1 and INHBB genes exhibited significant correlations with some radiomic features. OS was associated with Ratio 3D Surface/volume (p = 0.022) and ALDH1A1 expression (p = 0.042), whereas clinical stage (p = 0.004), ABCC2 expression (p = 0.035), and EntropyGLCM_E (p = 0.0031), were prognostic factors for PFS. Combining CE-CT radiomics with gene expression analysis and histopathological examination of primary CRC could provide higher prognostic stratification power, leading to improved patient management.
Keyphrases
- gene expression
- contrast enhanced
- computed tomography
- prognostic factors
- dual energy
- magnetic resonance imaging
- diffusion weighted
- dna methylation
- poor prognosis
- magnetic resonance
- free survival
- positron emission tomography
- image quality
- genome wide identification
- end stage renal disease
- genome wide
- diffusion weighted imaging
- chronic kidney disease
- newly diagnosed
- electronic health record
- big data
- long non coding rna
- mass spectrometry
- peritoneal dialysis
- binding protein
- risk assessment
- machine learning
- case report
- data analysis
- young adults
- nk cells
- patient reported outcomes
- bioinformatics analysis