Biomarker expression analysis in different age groups revealed age was a risk factor for breast cancer.
Xiaoran MaCun LiuXiaowei XuLijuan LiuChundi GaoJing ZhuangHuayao LiFubin FengChao ZhouZhen LiuJie LiJunyu WeiLu WangChanggang SunPublished in: Journal of cellular physiology (2019)
The relationship between age and breast cancer is ambiguous. Here, we analyzed the differential expression pattern of long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) in different age groups to provide an effective association between age and breast cancer risk at the molecular level. We integrated the microarray information from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data sets. The patients were divided into young ( < 50 years) and old ( ≥ 50 years) age groups and evaluated by differential gene expression, weighted gene correlation network analysis (WGCNA), functional enrichment analyses, and coexpression analysis. To determine their potential clinical significance, univariate Cox regression analysis and survival assessment were conducted. We identified two lncRNAs (AL139280.1 and AP000851.1) and three mRNAs (MT1M, HBB, and TFPI2) as the risk markers, and Gene set enrichment analysis (GSEA) focusing on a single gene revealed that "pyrimidine metabolism," "cell cycle," and "P53 signaling pathway" were coenriched. These data demonstrated that age may be a risk factor for breast carcinogenesis and prognosis and provide an in-depth molecular characterization based on the expression patterns of lncRNAs and mRNAs.
Keyphrases
- network analysis
- gene expression
- cell cycle
- genome wide identification
- signaling pathway
- genome wide analysis
- genome wide
- dna methylation
- poor prognosis
- healthcare
- breast cancer risk
- single cell
- electronic health record
- newly diagnosed
- machine learning
- cell proliferation
- oxidative stress
- transcription factor
- young adults
- risk assessment
- pi k akt
- patient reported outcomes
- long non coding rna
- data analysis
- health information
- induced apoptosis