TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data.

Jiao ChenJiating HuangYanni Sun

Published in: BMC bioinformatics (2019)

TAR-VIR can be used standalone for viral strain reconstruction from metagenomic data. Or, its read recruiting stage can be used with other de novo assembly tools for superior viral functional and taxonomic analyses. The source code and the documentation of TAR-VIR are available at https://github.com/chjiao/TAR-VIR .

Keyphrases

electronic health record
sars cov
big data
antibiotic resistance genes
machine learning
wastewater treatment