Yanni Sun

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 27

Top Venues

Bioinformatics (Oxford, England)

BMC bioinformatics

Molecular biology and evolution

GigaScience

Michigan State University Extension

Washington University in Saint Louis (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Michigan State University Extension

United States

Associate Professor :: Computer Science and Engineering

Michigan State University Aug 15 2008 - Jul 30 2016

United States

Assistant Professor :: Computer Science and Engineering

Education History

Washington University in Saint Louis

United States

PHD :: Computer Science and Engineering

Publications

Xubo Tang, Jiayu Shang, Guowei Chen, Kei-Hang Katie Chan, Mang Shi, Yanni Sun
SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. Molecular biology and evolution 41 (8) (2024)
Guowei Chen, Jing-Zhe Jiang, Yanni Sun
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes. GigaScience 13 (2024)
Guowei Chen, Jing-Zhe Jiang, Yanni Sun
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes. GigaScience 13 (2024)
Ziyi Huang, Dehan Cai, Yanni Sun
Towards more accurate microbial source tracking via non-negative matrix factorization (NMF). Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Xubo Tang, Jiayu Shang, Guowei Chen, Kei-Hang Katie Chan, Mang Shi, Yanni Sun
SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. Molecular biology and evolution 41 (8) (2024)
Xubo Tang, Jiayu Shang, Guowei Chen, Kei Hang Katie Chan, Mang Shi, Yanni Sun
SegVir: Reconstruction of complete segmented RNA viral genomes from metatranscriptomes. Molecular biology and evolution (2024)
Ziyi Huang, Dehan Cai, Yanni Sun
Towards more accurate microbial source tracking via non-negative matrix factorization (NMF). Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Ziyi Huang, Dehan Cai, Yanni Sun
Towards more accurate microbial source tracking via non-negative matrix factorization (NMF). Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Jiayu Shang, Cheng Peng, Herui Liao, Xubo Tang, Yanni Sun
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data. Bioinformatics advances 3 (1) (2023)
Runzhou Yu, Dehan Cai, Yanni Sun
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Guowei Chen, Xubo Tang, Mang Shi, Yanni Sun
VirBot: an RNA viral contig detector for metagenomic data. Bioinformatics (Oxford, England) 39 (3) (2023)
Jiayu Shang, Cheng Peng, Xubo Tang, Yanni Sun
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Runzhou Yu, Dehan Cai, Yanni Sun
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Xubo Tang, Jiayu Shang, Yongxin Ji, Yanni Sun
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer. Nucleic acids research (2023)
Jiaojiao Guan, Cheng Peng, Jiayu Shang, Xubo Tang, Yanni Sun
PhaGenus: genus-level classification of bacteriophages using a Transformer model. Briefings in bioinformatics 24 (6) (2023)
Runzhou Yu, Dehan Cai, Yanni Sun
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Guowei Chen, Xubo Tang, Mang Shi, Yanni Sun
VirBot: an RNA viral contig detector for metagenomic data. Bioinformatics (Oxford, England) 39 (3) (2023)
Guowei Chen, Xubo Tang, Mang Shi, Yanni Sun
VirBot: an RNA viral contig detector for metagenomic data. Bioinformatics (Oxford, England) 39 (3) (2023)
Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Bioinformatics (Oxford, England) 39 (5) (2023)
Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Bioinformatics (Oxford, England) 39 (5) (2023)
Runzhou Yu, Dehan Cai, Yanni Sun
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Jing-Zhe Jiang, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, Li-Hong Yuan
Virus classification for viral genomic fragments using PhaGCN2. Briefings in bioinformatics (2022)
Herui Liao, Dehan Cai, Yanni Sun
VirStrain: a strain identification tool for RNA viruses. Genome biology 23 (1) (2022)
Xubo Tang, Yanni Sun
Fast and accurate microRNA search using CNN. BMC bioinformatics 20 (Suppl 23) (2019)
Prapaporn Techa-Angkoon, Kevin L Childs, Yanni Sun
GPRED-GC: a Gene PREDiction model accounting for 5 '- 3' GC gradient. BMC bioinformatics 20 (Suppl 15) (2019)
Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun
A binning tool to reconstruct viral haplotypes from assembled contigs. BMC bioinformatics 20 (1) (2019)
Jiao Chen, Jiating Huang, Yanni Sun
TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data. BMC bioinformatics 20 (1) (2019)

Yanni Sun.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Yanni Sun