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miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer.

Mahmoud AhmedHuynh NguyenTrang LaiDeok Ryong Kim
Published in: BMC research notes (2018)
Expression data of miRNAs, mRNAs and proteins in cancer patients from The Cancer Genome Atlas along with TargetScan miRNAs-target annotations were used to calculate the expression correlations between miRNAs and features (mRNAs/proteins) in a number of cancer studies. We then packed the output of this analysis into a database and made it available through an interactive web application. The miRCancerdb is an easy-to-use database to investigate the microRNAs-dependent regulation of target genes involved in development of cancer.
Keyphrases
  • papillary thyroid
  • gene expression
  • squamous cell
  • poor prognosis
  • dna methylation
  • childhood cancer
  • adverse drug
  • deep learning