Login / Signup

Atomistic characterization of collective protein-water-membrane dynamics.

Christopher PäslackLars V SchäferMatthias Heyden
Published in: Physical chemistry chemical physics : PCCP (2019)
Correlated vibrational motion on the sub-picosecond timescale and associated collective dynamics in a protein-membrane environment are characterized using molecular dynamics simulations. We specifically analyze correlated motion of a membrane-associated protein and a lipid bilayer for distinct separation distances. Correlated vibrations persist up to distances of 25 Å between both biomolecular surfaces. These correlations are mediated by separating layers of water molecules, whose collective properties are altered by the simultaneous presence of protein and lipid bilayer interfaces.
Keyphrases
  • molecular dynamics simulations
  • protein protein
  • molecular docking
  • binding protein
  • amino acid
  • fatty acid
  • escherichia coli
  • pseudomonas aeruginosa
  • quantum dots
  • candida albicans