Nonmonotone invasion landscape by noise-aware control of metastasis activator levels.
Yiming WanJoseph CohenMariola SzenkKevin S FarquharDamiano CoraciRafał KrzysztońJoshua AzukasNicholas Van NestAlex SmashnovYi-Jye ChernDaniela De MartinoLong Chi NguyenHarold BienJose Javier Bravo-CorderoChia-Hsin ChanMarsha Rich RosnerGábor BalázsiPublished in: Nature chemical biology (2023)
A major pharmacological assumption is that lowering disease-promoting protein levels is generally beneficial. For example, inhibiting metastasis activator BACH1 is proposed to decrease cancer metastases. Testing such assumptions requires approaches to measure disease phenotypes while precisely adjusting disease-promoting protein levels. Here we developed a two-step strategy to integrate protein-level tuning, noise-aware synthetic gene circuits into a well-defined human genomic safe harbor locus. Unexpectedly, engineered MDA-MB-231 metastatic human breast cancer cells become more, then less and then more invasive as we tune BACH1 levels up, irrespective of the native BACH1. BACH1 expression shifts in invading cells, and expression of BACH1's transcriptional targets confirm BACH1's nonmonotone phenotypic and regulatory effects. Thus, chemical inhibition of BACH1 could have unwanted effects on invasion. Additionally, BACH1's expression variability aids invasion at high BACH1 expression. Overall, precisely engineered, noise-aware protein-level control is necessary and important to unravel disease effects of genes to improve clinical drug efficacy.
Keyphrases
- poor prognosis
- binding protein
- endothelial cells
- breast cancer cells
- air pollution
- protein protein
- amino acid
- small cell lung cancer
- gene expression
- cell migration
- small molecule
- transcription factor
- induced apoptosis
- genome wide
- long non coding rna
- emergency department
- copy number
- squamous cell carcinoma
- induced pluripotent stem cells
- antiretroviral therapy
- young adults
- cell cycle arrest
- drug induced
- cell proliferation
- immune response
- genome wide identification