New insight of chemical constituents in Persea americana fruit against obesity via integrated pharmacology.
Min-Gi ChaSu-Been LeeSang-Jun YoonSang Youn LeeHaripriya GuptaRaja GanesanSatya Priya SharmaSung-Min WonJin-Ju JeongDong Joon KimKi Kwang OhKi-Tae SukPublished in: Clinical and translational science (2024)
Persea americana fruit (PAF) is a favorable nutraceutical resource that comprises diverse unsaturated fatty acids (UFAs). UFAs are significant dietary supplementation, as they relieve metabolic disorders, including obesity (OB). In another aspect, this study was focused on the anti-OB efficacy of the non-fatty acids (NFAs) in PAF through network pharmacology (NP). Natural product activity & species source (NPASS), SwissADME, similarity ensemble approach (SEA), Swiss target prediction (STP), DisGeNET, and online Mendelian inheritance in man (OMIM) were utilized to gather significant molecules and its targets. The crucial targets were adopted to construct certain networks: protein-protein interaction (PPI), PAF-signaling pathways-targets-compounds (PSTC) networks, a bubble chart, molecular docking assay (MDA), and density function theory (DFT). Finally, the toxicities of the key compounds were validated by ADMETlab 2.0 platform. All 41 compounds in PAF conformed to Lipinski's rule, and the key 31 targets were identified between OB and PAF. On the bubble chart, PPAR signaling pathway had the highest rich factor, suggesting that the pathway might be an agonism for anti-OB. Conversely, estrogen signaling pathway had the lowest rich factor, indicating that the mechanism might be antagonism against OB. Likewise, the PSTC network represented that AKT1 had the greatest degree value. The MDA results showed that AKT1-gamma-tocopherol, PPARA-fucosterol, PPARD-stigmasterol, (PPARG)-fucosterol, (NR1H3)-campesterol, and ILK-alpha-tocopherol formed the most stable conformers. The DFT represented that the five molecules might be promising agents via multicomponent targeting. Overall, this study suggests that the NFAs in PAF might play important roles against OB.
Keyphrases
- signaling pathway
- molecular docking
- fatty acid
- protein protein
- pi k akt
- insulin resistance
- metabolic syndrome
- epithelial mesenchymal transition
- cell proliferation
- high throughput
- weight loss
- induced apoptosis
- type diabetes
- small molecule
- weight gain
- molecular dynamics simulations
- healthcare
- density functional theory
- social media
- oxidative stress
- skeletal muscle
- breast cancer cells
- machine learning
- drug delivery
- endoplasmic reticulum stress
- physical activity
- crystal structure