Molecular bioSystems

Keyphrases

Publications

volume 13, number 7, 2018

Nathan Dyjack, Cassandra Azeredo-Tseng, Necmettin Yildirim
Mathematical modeling reveals differential regulation of MAPK activity by phosphatase proteins in the yeast pheromone response pathway. Molecular bioSystems 13 (7) (2018)
Manika Kargeti, K V Venkatesh
The effect of global transcriptional regulators on the anaerobic fermentative metabolism of Escherichia coli. Molecular bioSystems 13 (7) (2018)
Damien Nicolas, Nick E Phillips, Felix Naef
What shapes eukaryotic transcriptional bursting? Molecular bioSystems 13 (7) (2018)
Giup Jang, Taekeon Lee, Byung Mun Lee, Youngmi Yoon
Literature-based prediction of novel drug indications considering relationships between entities. Molecular bioSystems 13 (7) (2018)
M-T Matsoukas, G A Spyroulias
Dynamic properties of the growth hormone releasing hormone receptor (GHRHR) and molecular determinants of GHRH binding. Molecular bioSystems 13 (7) (2018)
Andreas Tjärnberg, Daniel C Morgan, Matthew Studham, Torbjörn E M Nordling, Erik L L Sonnhammer
GeneSPIDER - gene regulatory network inference benchmarking with controlled network and data properties. Molecular bioSystems 13 (7) (2018)
Feng Wang, Lijun Yang, Jianping Sun, Jun Zheng, Lin Shi, Gengshen Zhang, Na Cui
Tumor suppressors microRNA-302d and microRNA-16 inhibit human glioblastoma multiforme by targeting NF-κB and FGF2. Molecular bioSystems 13 (7) (2018)

volume 13, number 8, 2018

Junwei Fang, Liping Wang, Yang Wang, Mingfeng Qiu, Yongyu Zhang
Metabolomics combined with pattern recognition and bioinformatics analysis methods for the development of pharmacodynamic biomarkers on liver fibrosis. Molecular bioSystems 13 (8) (2018)
C W Pinger, K E Entwistle, T M Bell, Y Liu, Dana M Spence
C-Peptide replacement therapy in type 1 diabetes: are we in the trough of disillusionment? Molecular bioSystems 13 (8) (2018)
Sutanu Nandi, Abhishek Subramanian, Ram Rup Sarkar
An integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features. Molecular bioSystems 13 (8) (2018)
Md Al Mehedi Hasan, Shamim Ahmad, Md Khademul Islam Molla
iMulti-HumPhos: a multi-label classifier for identifying human phosphorylated proteins using multiple kernel learning based support vector machines. Molecular bioSystems 13 (8) (2018)
Kwang Bo Jung, Ye Seul Son, Hana Lee, Cho-Rok Jung, Janghwan Kim, Myung Jin Son
Transcriptome dynamics of human pluripotent stem cell-derived contracting cardiomyocytes using an embryoid body model with fetal bovine serum. Molecular bioSystems 13 (8) (2018)
Sainitin Donakonda, Swati Sinha, Shrinivas Nivrutti Dighe, Manchanahalli R Satyanarayana Rao
System analysis identifies distinct and common functional networks governed by transcription factor ASCL1, in glioma and small cell lung cancer. Molecular bioSystems 13 (8) (2018)
Damian S McAninch, Ashley M Heinaman, Cara N Lang, Kathryn R Moss, Gary J Bassell, Mihaela Rita Mihailescu, Timothy L Evans
Fragile X mental retardation protein recognizes a G quadruplex structure within the survival motor neuron domain containing 1 mRNA 5'-UTR. Molecular bioSystems 13 (8) (2018)
Yincong Chen, Haibiao Xie, Yifan Zou, Xiulan Lai, Lian Ma, Yuchen Liu, Jianfa Li
Tetracycline-controllable artificial microRNA-HOTAIR + EZH2 suppressed the progression of bladder cancer cells. Molecular bioSystems 13 (8) (2018)
Anirban Basu, Gopinatha Suresh Kumar
Interaction and inhibitory influence of the azo dye carmoisine on lysozyme amyloid fibrillogenesis. Molecular bioSystems 13 (8) (2018)
Domenica Capasso, Sonia Di Gaetano, Veronica Celentano, Donatella Diana, Luisa Festa, Rossella Di Stasi, Lucia De Rosa, Roberto Fattorusso, Luca Domenico D'Andrea
Unveiling a VEGF-mimetic peptide sequence in the IQGAP1 protein. Molecular bioSystems 13 (8) (2018)
Elaheh Jamasbi, Frances Separovic, Mohammed Akhter Hossain, Giuseppe Donato Ciccotosto
Phosphorylation of a full length amyloid-β peptide modulates its amyloid aggregation, cell binding and neurotoxic properties. Molecular bioSystems 13 (8) (2018)
Mohanraj Krishnan, John M D Thompson, Edwin A Mitchell, Rinki Murphy, Lesley M E McCowan, Andrew N Shelling, G On Behalf Of The Children Of Scope Study Group
Analysis of association of gene variants with obesity traits in New Zealand European children at 6 years of age. Molecular bioSystems 13 (8) (2018)
Minyu Zhang, Hongwei Wu, Feifei Guo, Yangyang Yu, Junying Wei, Ya Geng, Shifeng Wang, Shiyou Li, Hongjun Yang
Identification of active components in Yixinshu Capsule with protective effects against myocardial dysfunction on human induced pluripotent stem cell-derived cardiomyocytes by an integrative approach. Molecular bioSystems 13 (8) (2018)
Amit Laxmikant Deshmukh, Sharat Chandra, Deependra Kumar Singh, Mohammad Imran Siddiqi, Dibyendu Banerjee
Identification of human flap endonuclease 1 (FEN1) inhibitors using a machine learning based consensus virtual screening. Molecular bioSystems 13 (8) (2018)
Tagari Samanta, Peeyush Sharma, Dwijendra Kukri, Sandip Kar
Decoding the regulatory mechanism of glucose and insulin induced phosphatidylinositol 3,4,5-trisphosphate dynamics in β-cells. Molecular bioSystems 13 (8) (2018)
Xiaoping Zhao, Feng Zhang, Yi Wang
Proteomic analysis reveals Xuesaitong injection attenuates myocardial ischemia/reperfusion injury by elevating pyruvate dehydrogenase-mediated aerobic metabolism. Molecular bioSystems 13 (8) (2018)
Asad Khan, Sajid Shah, Fazli Wahid, Fiaz Gul Khan, Saima Jabeen
Identification of microRNA precursors using reduced and hybrid features. Molecular bioSystems 13 (8) (2018)
E Srinivasan, Rajasekaran Ramalingam
Computational investigation of the human SOD1 mutant, Cys146Arg, that directs familial amyotrophic lateral sclerosis. Molecular bioSystems 13 (8) (2018)
Mubashir Hassan, Qamar Abbas, Hussain Raza, Ahmed A Moustafa, Mubashir Hassan
Computational analysis of histidine mutations on the structural stability of human tyrosinases leading to albinism insurgence. Molecular bioSystems 13 (8) (2018)
Luz M Meneghini, Sarvind M Tripathi, Marcus A Woodworth, Sudipta Majumdar, Thomas L Poulos, Gregory A Weiss
Dissecting binding of a β-barrel membrane protein by phage display. Molecular bioSystems 13 (8) (2018)
S Harikrishna, Saikiran Kotaru, Pushpangadan Indira Pradeepkumar
Ligand-induced conformational preorganization of loops of c-MYC G-quadruplex DNA and its implications in structure-specific drug design. Molecular bioSystems 13 (8) (2018)

volume 13, number 9, 2018

Cuiping Li, Youxun Liu, Yun Fu, Tengfei Huang, Lixia Kang, Changzheng Li
The antiproliferative activity of di-2-pyridylketone dithiocarbamate is partly attributed to catalase inhibition: detailing the interaction by spectroscopic methods. Molecular bioSystems 13 (9) (2018)
Xinbo Huang, Chengle Zhuang, Changshui Zhuang, Tiefu Xiong, Yawen Li, Yaoting Gui
An enhanced hTERT promoter-driven CRISPR/Cas9 system selectively inhibits the progression of bladder cancer cells. Molecular bioSystems 13 (9) (2018)
Muthukumaran Rajagopalan, Sangeetha Balasubramanian, Amutha Ramaswamy
Insights into the RNA binding mechanism of human L1-ORF1p: a molecular dynamics study. Molecular bioSystems 13 (9) (2018)
Swati Chaudhary, Mahima Kaushik, Ritushree Kukreti, Shrikant Kukreti
Structural switch from a multistranded G-quadruplex to single strands as a consequence of point mutation in the promoter of the human GRIN1 gene. Molecular bioSystems 13 (9) (2018)
Michael J Booth, Vanessa Restrepo Schild, Florence G Downs, Hagan Bayley
Functional aqueous droplet networks. Molecular bioSystems 13 (9) (2018)
Sara Khan, Umar Farooq, Maria Kurnikova
Protein stability and dynamics influenced by ligands in extremophilic complexes - a molecular dynamics investigation. Molecular bioSystems 13 (9) (2018)
Q Vanhaelen, A M Aliper, A Zhavoronkov
A comparative review of computational methods for pathway perturbation analysis: dynamical and topological perspectives. Molecular bioSystems 13 (9) (2018)
Zhihua Du, Vladimir N Uversky
Functional roles of intrinsic disorder in CRISPR-associated protein Cas9. Molecular bioSystems 13 (9) (2018)
K Shubham, L Vinay, P K Vinod
Systems-level organization of non-alcoholic fatty liver disease progression network. Molecular bioSystems 13 (9) (2018)
Ander Camiruaga, Imanol Usabiaga, Aran Insausti, Emilio J Cocinero, Iker León, José A Fernández
Understanding the role of tyrosine in glycogenin. Molecular bioSystems 13 (9) (2018)
Wenbo Jiang, Yingying Chen, Bai Li, Shuying Gao
DBA-induced caspase-3-dependent apoptosis occurs through mitochondrial translocation of cyt-c in the rat hippocampus. Molecular bioSystems 13 (9) (2018)
Huan Hu, Chunyu Zhu, Haixin Ai, Li Zhang, Jian Zhao, Qi Zhao, Hongsheng Liu
LPI-ETSLP: lncRNA-protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction. Molecular bioSystems 13 (9) (2018)
Olga D Novikova, Dmitry K Chistyulin, Valentina A Khomenko, Evgeny V Sidorin, Natalya Yu Kim, Nina M Sanina, Olga Yu Portnyagina, Tamara F Solov'eva, Vladimir N Uversky, Valery L Shnyrov
Peculiarities of thermal denaturation of OmpF porin from Yersinia ruckeri. Molecular bioSystems 13 (9) (2018)
Mohamad Hafizi Abu Bakar, Mohamad Roji Sarmidi
Association of cultured myotubes and fasting plasma metabolite profiles with mitochondrial dysfunction in type 2 diabetes subjects. Molecular bioSystems 13 (9) (2018)
Mehrdad Ghadiri, Mahshid Heidari, Sayed-Amir Marashi, Seyed Hasan Mousavi
A multiscale agent-based framework integrated with a constraint-based metabolic network model of cancer for simulating avascular tumor growth. Molecular bioSystems 13 (9) (2018)
Wei-Li Guo, De-Shuang Huang
An efficient method to transcription factor binding sites imputation via simultaneous completion of multiple matrices with positional consistency. Molecular bioSystems 13 (9) (2018)
Youhyeon Hwang, Min Oh, Giup Jang, Taekeon Lee, Chihyun Park, Jaegyoon Ahn, Youngmi Yoon
Identifying the common genetic networks of ADR (adverse drug reaction) clusters and developing an ADR classification model. Molecular bioSystems 13 (9) (2018)
Xiang Cheng, Xuan Xiao, Kuo-Chen Chou
pLoc-mPlant: predict subcellular localization of multi-location plant proteins by incorporating the optimal GO information into general PseAAC. Molecular bioSystems 13 (9) (2018)
Mohammad Wahab Khan, Ayaluru Murali
Modeling of alcohol oxidase enzyme of Candida boidinii and in silico analysis of competitive binding of proton ionophores and FAD with enzyme. Molecular bioSystems 13 (9) (2018)
Xinying Hu, Hang Wei, Haoran Zheng
Identification of perturbed signaling pathways from gene expression data using information divergence. Molecular bioSystems 13 (9) (2018)
T Takatani-Nakase, M Katayama, C Matsui, K Hanaoka, A J van der Vlies, K Takahashi, I Nakase, U Hasegawa
Hydrogen sulfide donor micelles protect cardiomyocytes from ischemic cell death. Molecular bioSystems 13 (9) (2018)
Daniel Möller, Manuela Gellert, Walter Langel, Christopher Horst Lillig
Molecular dynamics simulations and in vitro analysis of the CRMP2 thiol switch. Molecular bioSystems 13 (9) (2018)