Acta crystallographica. Section D, Biological crystallography

Keyphrases

Publications

volume 71, number Pt 7, 2015

Cameron D Fyfe, Rhys Grinter, Inokentijs Josts, Khedidja Mosbahi, Aleksander W Roszak, Richard J Cogdell, Daniel M Wall, Richard J S Burchmore, Olwyn Byron, Daniel Walker
Structure of protease-cleaved Escherichia coli α-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Randy Suryadinata, Shane A Seabrook, Timothy E Adams, Stewart D Nuttall, Thomas S Peat
Structural and biochemical analyses of a Clostridium perfringens sortase D transpeptidase. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Weizhe Zhang, Hongmin Zhang, Tao Zhang, Haifu Fan, Quan Hao
Protein-complex structure completion using IPCAS (Iterative Protein Crystal structure Automatic Solution). Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Stefan Klingl, Myriam Scherer, Thomas Stamminger, Yves A Muller
Controlled crystal dehydration triggers a space-group switch and shapes the tertiary structure of cytomegalovirus immediate-early 1 (IE1) protein. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Justin A Newman, Nicole M Scarborough, Nicholas R Pogranichniy, Rashmi K Shrestha, Richard G Closser, Chittaranjan Das, Garth J Simpson
Intercalating dyes for enhanced contrast in second-harmonic generation imaging of protein crystals. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Sebastián Klinke, Nicolas Foos, Jimena J Rinaldi, Gastón Paris, Fernando A Goldbaum, Pierre Legrand, Beatriz G Guimarães, Andrew Thompson
S-SAD phasing of monoclinic histidine kinase from Brucella abortus combining data from multiple crystals and orientations: an example of data-collection strategy and a posteriori analysis of different data combinations. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
R Sánchez-Giraldo, F J Acosta-Reyes, C S Malarkey, N Saperas, M E A Churchill, J L Campos
Two high-mobility group box domains act together to underwind and kink DNA. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Maura Malinska, Miroslawa Dauter, Marcin Kowiel, Mariusz Jaskolski, Zbigniew Dauter
Protonation and geometry of histidine rings. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
Gerald R Kneller, Konrad Hinsen
Protein secondary-structure description with a coarse-grained model. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)
S M Arif, K Geethanandan, P Mishra, A Surolia, U Varshney, M Vijayan
Structural plasticity in Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) and its functional implications. Acta crystallographica. Section D, Biological crystallography 71 (Pt 7) (2015)

volume 71, number Pt 8, 2015

Alexandre Urzhumtsev, Pavel V Afonine, Andrew H Van Benschoten, James S Fraser, Paul D Adams
From deep TLS validation to ensembles of atomic models built from elemental motions. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Vladimir Z Pletnev, Nadya V Pletneva, Karen S Sarkisyan, Alexander S Mishin, Konstantin A Lukyanov, Ekaterina A Goryacheva, Rustam H Ziganshin, Zbigniew Dauter, Sergei Pletnev
Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Cho Yeow Koh, Latha Kallur Siddaramaiah, Ranae M Ranade, Jasmine Nguyen, Tengyue Jian, Zhongsheng Zhang, J Robert Gillespie, Frederick S Buckner, Christophe L M J Verlinde, Erkang Fan, Wim G J Hol
A binding hotspot in Trypanosoma cruzi histidyl-tRNA synthetase revealed by fragment-based crystallographic cocktail screens. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Xiaojiao Fan, Xu Zhang, Yuwei Zhu, Liwen Niu, Maikun Teng, Baolin Sun, Xu Li
Structure of the DNA-binding domain of the response regulator SaeR from Staphylococcus aureus. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Andreas Dietl, Wouter Maalcke, Thomas R M Barends
An unexpected reactivity of the P460 cofactor in hydroxylamine oxidoreductase. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Olof Svensson, Stéphanie Malbet-Monaco, Alexander Popov, Didier Nurizzo, Matthew W Bowler
Fully automatic characterization and data collection from crystals of biological macromolecules. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Andrew H Van Benschoten, Pavel V Afonine, Thomas C Terwilliger, Michael E Wall, Colin J Jackson, Nicholas K Sauter, Paul D Adams, Alexandre Urzhumtsev, James S Fraser
Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Denis R Burton, Sofia Caria, Bevan Marshall, Michele Barry, Marc Kvansakul
Structural basis of Deerpox virus-mediated inhibition of apoptosis. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Natalia A Díaz-Torres, Brian P Mahon, Christopher D Boone, Melissa A Pinard, Chingkuang Tu, Robert Ng, Mavis Agbandje-McKenna, David Silverman, Kathleen Scott, Robert McKenna
Structural and biophysical characterization of the α-carbonic anhydrase from the gammaproteobacterium Thiomicrospira crunogena XCL-2: insights into engineering thermostable enzymes for CO2 sequestration. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Hiroshi Itou, Yasuo Shirakihara, Hiroyuki Araki
The quaternary structure of the eukaryotic DNA replication proteins Sld7 and Sld3. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Wouter G Touw, Robbie P Joosten, Gert Vriend
Detection of trans-cis flips and peptide-plane flips in protein structures. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Zhen Qin, Qiaojuan Yan, Jian Lei, Shaoqing Yang, Zhengqiang Jiang, Shiwang Wu
The first crystal structure of a glycoside hydrolase family 17 β-1,3-glucanosyltransferase displays a unique catalytic cleft. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Fanny Coppens, Jegan Iyyathurai, Ségolène Ruer, Antonella Fioravanti, Joemar Taganna, Lars Vereecke, Henri De Greve, Han Remaut
Structural and adhesive properties of the long polar fimbriae protein LpfD from adherent-invasive Escherichia coli. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Muriel Gelin, Vanessa Delfosse, Frédéric Allemand, François Hoh, Yoann Sallaz-Damaz, Michel Pirocchi, William Bourguet, Jean Luc Ferrer, Gilles Labesse, Jean François Guichou
Combining 'dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Mark F Rosenberg, Zsolt Bikadi, Eszter Hazai, Tobias Starborg, Lawrence Kelley, Naomi E Chayen, Robert C Ford, Qingcheng Mao
Three-dimensional structure of the human breast cancer resistance protein (BCRP/ABCG2) in an inward-facing conformation. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Apirat Chaikuad, Stefan Knapp, Frank von Delft
Defined PEG smears as an alternative approach to enhance the search for crystallization conditions and crystal-quality improvement in reduced screens. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Michele Cianci, Claudia Folli, Francesco Zonta, Paola Florio, Rodolfo Berni, Giuseppe Zanotti
Structural evidence for asymmetric ligand binding to transthyretin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Kristin A Sutton, Jennifer Breen, Ulrike MacDonald, Janet M Beanan, Ruth Olson, Thomas A Russo, L Wayne Schultz, Timothy C Umland
Structure of shikimate kinase, an in vivo essential metabolic enzyme in the nosocomial pathogen Acinetobacter baumannii, in complex with shikimate. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)
Ambika Mosale Venkatesh Murthy, Subashini Mathivanan, Sagar Chittori, Handanahal Subbarao Savithri, Mathur Ramabhadrashastry Narasimha Murthy
Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism. Acta crystallographica. Section D, Biological crystallography 71 (Pt 8) (2015)

volume 71, number Pt 9, 2015

Dirk Kostrewa, Claus-D Kuhn, Christoph Engel, Patrick Cramer
An alternative RNA polymerase I structure reveals a dimer hinge. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Min-Kyu Kim, Ji-Hye Kim, Ji-Sun Kim, Sa-Ouk Kang
Structure of the 34 kDa F-actin-bundling protein ABP34 from Dictyostelium discoideum. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Gilles Labesse, Thomas Alexandre, Muriel Gelin, Ahmed Haouz, Hélène Munier-Lehmann
Crystallographic studies of two variants of Pseudomonas aeruginosa IMPDH with impaired allosteric regulation. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Maria Cristina Burla, Benedetta Carrozzini, Giovanni Luca Cascarano, Carmelo Giacovazzo, Giampiero Polidori
Refining a model electron-density map via the Phantom Derivative method. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Loes M J Kroon-Batenburg, Antoine M M Schreurs, Raimond B G Ravelli, Piet Gros
Accounting for partiality in serial crystallography using ray-tracing principles. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Amie K Boal, Amy C Rosenzweig
Response from Boal and Rosenzweig to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Claudia Millán, Massimo Sammito, Irene Garcia-Ferrer, Theodoros Goulas, George M Sheldrick, Isabel Usón
Combining phase information in reciprocal space for molecular replacement with partial models. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Yasushi Amano, Ichiji Namatame, Yukihiro Tateishi, Kazuya Honboh, Eiki Tanabe, Tatsuya Niimi, Hitoshi Sakashita
Structural insights into the novel inhibition mechanism of Trypanosoma cruzi spermidine synthase. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Massimo Sammito, Claudia Millán, Dawid Frieske, Eloy Rodríguez-Freire, Rafael J Borges, Isabel Usón
ARCIMBOLDO_LITE: single-workstation implementation and use. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Cecilia Pozzi, Flavio Di Pisa, Caterina Bernacchioni, Silvia Ciambellotti, Paola Turano, Stefano Mangani
Iron binding to human heavy-chain ferritin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Tatiana V Porto, Michael A Hough, Jonathan A R Worrall
Structural insights into conformational switching in the copper metalloregulator CsoR from Streptomyces lividans. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Chengliang Wang, Qiongdi Zhang, Tianrong Hang, Yue Tao, Xukai Ma, Minhao Wu, Xuan Zhang, Jianye Zang
Structure of the JmjC domain-containing protein NO66 complexed with ribosomal protein Rpl8. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Hanno Sjuts, Mark S Dunstan, Karl Fisher, David Leys
Structures of the methyltransferase component of Desulfitobacterium hafniense DCB-2 O-demethylase shed light on methyltetrahydrofolate formation. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Jooyoung Park, Ann M Guggisberg, Audrey R Odom, Niraj H Tolia
Cap-domain closure enables diverse substrate recognition by the C2-type haloacid dehalogenase-like sugar phosphatase Plasmodium falciparum HAD1. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Patricia M Legler, Iswarduth Soojhawon, Charles B Millard
A conformational change in the peripheral anionic site of Torpedo californica acetylcholinesterase induced by a bis-imidazolium oxime. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Todd O Yeates
Responses to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Ivan Shabalin, Zbigniew Dauter, Mariusz Jaskolski, Wladek Minor, Alexander Wlodawer
Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Benedetta Carrozzini, Giovanni Luca Cascarano, Carmelo Giacovazzo, Annamaria Mazzone
Advances in molecular-replacement procedures: the REVAN pipeline. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Yamuna Kalyani Mathiharan, H S Savithri, M R N Murthy
Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Simon W M Tanley, Kay Diederichs, Loes M J Kroon-Batenburg, Colin Levy, Antoine M M Schreurs, John R Helliwell
Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)
Markus Alahuhta, Larry E Taylor, Roman Brunecky, Deanne W Sammond, William Michener, Michael W W Adams, Michael E Himmel, Yannick J Bomble, Vladimir Lunin
The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase. Acta crystallographica. Section D, Biological crystallography 71 (Pt 9) (2015)