Microbiome

Keyphrases

Publications

volume 12, number 1, 2024

Changfeng Zhang, Marcel G A van der Heijden, Bethany K Dodds, Thi Bich Nguyen, Jelle Spooren, Alain Valzano-Held, Marco Cosme, Roeland L Berendsen
A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization. Microbiome 12 (1) (2024)
Nejash A Ahmed, Timur Gulhan
Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds. Microbiome 12 (1) (2024)
Ru-Yi Zhang, Yan-Ren Wang, Ru-Long Liu, Sung-Keun Rhee, Guo-Ping Zhao, Zhe-Xue Quan
Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment. Microbiome 12 (1) (2024)
Luis E Valentin-Alvarado, Sirine C Fakra, Alexander J Probst, Jonathan R Giska, Alexander L Jaffe, Luke M Oltrogge, Jacob West-Roberts, Joel Rowland, Michael Manga, David F Savage, Chris Greening, Brett J Baker, Jillian F Banfield
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. Microbiome 12 (1) (2024)
S L Tsola, Y Zhu, Y Chen, I A Sanders, C K Economou, V Brüchert, Ö Eyice
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments. Microbiome 12 (1) (2024)
Changfeng Zhang, Marcel G A van der Heijden, Bethany K Dodds, Thi Bich Nguyen, Jelle Spooren, Alain Valzano-Held, Marco Cosme, Roeland L Berendsen
A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization. Microbiome 12 (1) (2024)
Weiguang Kong, Gaofeng Cheng, Jiafeng Cao, Jiaqian Yu, Xinyou Wang, Zhen Xu
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity. Microbiome 12 (1) (2024)
Gilda Varliero, Pedro H Lebre, Byron Adams, Steven L Chown, Peter Convey, Paul G Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D Hogg, David W Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K Newsham, Mark I Stevens, Katherine V Weigh, Don A Cowan
Biogeographic survey of soil bacterial communities across Antarctica. Microbiome 12 (1) (2024)
Ming Li, Hui Liang, Hongwei Yang, Qianwen Ding, Rui Xia, Jie Chen, Wenhao Zhou, Yalin Yang, Zhen Zhang, Yuanyuan Yao, Chao Ran, Zhigang Zhou
Deciphering the gut microbiome of grass carp through multi-omics approach. Microbiome 12 (1) (2024)
Abdelrahman Alahmad, Mourad Harir, Sylvain Fochesato, Joris Tulumello, Alesia Walker, Mohamed Barakat, Papa Mamadou Sitor Ndour, Philippe Schmitt-Kopplin, Laurent Cournac, Laurent Laplaze, Thierry Heulin, Wafa Achouak
Unraveling the interplay between root exudates, microbiota, and rhizosheath formation in pearl millet. Microbiome 12 (1) (2024)
Julius Eyiuche Nweze, Vladimír Šustr, Andreas Brune, Roey Angel
Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy. Microbiome 12 (1) (2024)
S L Tsola, Y Zhu, Y Chen, I A Sanders, C K Economou, V Brüchert, Ö Eyice
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments. Microbiome 12 (1) (2024)
Julius Eyiuche Nweze, Vladimír Šustr, Andreas Brune, Roey Angel
Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy. Microbiome 12 (1) (2024)
Jianmin Chai, Yimin Zhuang, Kai Cui, Yanliang Bi, Naifeng Zhang
Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids. Microbiome 12 (1) (2024)
Jianmin Chai, Yimin Zhuang, Kai Cui, Yanliang Bi, Naifeng Zhang
Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids. Microbiome 12 (1) (2024)
Weiguang Kong, Gaofeng Cheng, Jiafeng Cao, Jiaqian Yu, Xinyou Wang, Zhen Xu
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity. Microbiome 12 (1) (2024)
Weiguang Kong, Gaofeng Cheng, Jiafeng Cao, Jiaqian Yu, Xinyou Wang, Zhen Xu
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity. Microbiome 12 (1) (2024)
Nejash A Ahmed, Timur Gulhan
Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds. Microbiome 12 (1) (2024)
Yan Han, Xinglin Zeng, Lin Hua, Xingping Quan, Ying Chen, Manfei Zhou, Yaochen Chuang, Yang Li, Shengpeng Wang, Xu Shen, Lai Wei, Zhen Yuan, Yonghua Zhao
The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders. Microbiome 12 (1) (2024)
Runxiang Xie, Yu Gu, Mengfan Li, Lingfeng Li, Yunwei Yang, Yue Sun, Bingqian Zhou, Tianyu Liu, Sinan Wang, Wentian Liu, Rongcun Yang, Xiaomin Su, Weilong Zhong, Bangmao Wang, Hailong Cao
Desulfovibrio vulgaris interacts with novel gut epithelial immune receptor LRRC19 and exacerbates colitis. Microbiome 12 (1) (2024)
Erica Bonazzi, Alexis Bretin, Lucile Vigué, Fuhua Hao, Andrew D Patterson, Andrew T Gewirtz, Benoit Chassaing
Individualized microbiotas dictate the impact of dietary fiber on colitis sensitivity. Microbiome 12 (1) (2024)
Erica Bonazzi, Alexis Bretin, Lucile Vigué, Fuhua Hao, Andrew D Patterson, Andrew T Gewirtz, Benoit Chassaing
Individualized microbiotas dictate the impact of dietary fiber on colitis sensitivity. Microbiome 12 (1) (2024)
Ru-Yi Zhang, Yan-Ren Wang, Ru-Long Liu, Sung-Keun Rhee, Guo-Ping Zhao, Zhe-Xue Quan
Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment. Microbiome 12 (1) (2024)
Abdelrahman Alahmad, Mourad Harir, Sylvain Fochesato, Joris Tulumello, Alesia Walker, Mohamed Barakat, Papa Mamadou Sitor Ndour, Philippe Schmitt-Kopplin, Laurent Cournac, Laurent Laplaze, Thierry Heulin, Wafa Achouak
Unraveling the interplay between root exudates, microbiota, and rhizosheath formation in pearl millet. Microbiome 12 (1) (2024)
Ming Li, Hui Liang, Hongwei Yang, Qianwen Ding, Rui Xia, Jie Chen, Wenhao Zhou, Yalin Yang, Zhen Zhang, Yuanyuan Yao, Chao Ran, Zhigang Zhou
Deciphering the gut microbiome of grass carp through multi-omics approach. Microbiome 12 (1) (2024)
Julius Eyiuche Nweze, Vladimír Šustr, Andreas Brune, Roey Angel
Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy. Microbiome 12 (1) (2024)
Ming Li, Hui Liang, Hongwei Yang, Qianwen Ding, Rui Xia, Jie Chen, Wenhao Zhou, Yalin Yang, Zhen Zhang, Yuanyuan Yao, Chao Ran, Zhigang Zhou
Deciphering the gut microbiome of grass carp through multi-omics approach. Microbiome 12 (1) (2024)
Eitan E Asher, Amir Bashan
Model-free prediction of microbiome compositions. Microbiome 12 (1) (2024)
Luis E Valentin-Alvarado, Sirine C Fakra, Alexander J Probst, Jonathan R Giska, Alexander L Jaffe, Luke M Oltrogge, Jacob West-Roberts, Joel Rowland, Michael Manga, David F Savage, Chris Greening, Brett J Baker, Jillian F Banfield
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. Microbiome 12 (1) (2024)
Eitan E Asher, Amir Bashan
Model-free prediction of microbiome compositions. Microbiome 12 (1) (2024)
Jianmin Chai, Yimin Zhuang, Kai Cui, Yanliang Bi, Naifeng Zhang
Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids. Microbiome 12 (1) (2024)
Luis E Valentin-Alvarado, Sirine C Fakra, Alexander J Probst, Jonathan R Giska, Alexander L Jaffe, Luke M Oltrogge, Jacob West-Roberts, Joel Rowland, Michael Manga, David F Savage, Chris Greening, Brett J Baker, Jillian F Banfield
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. Microbiome 12 (1) (2024)
Yan Han, Xinglin Zeng, Lin Hua, Xingping Quan, Ying Chen, Manfei Zhou, Yaochen Chuang, Yang Li, Shengpeng Wang, Xu Shen, Lai Wei, Zhen Yuan, Yonghua Zhao
The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders. Microbiome 12 (1) (2024)
Angela Sofia Burkhart Colorado, Alessandro Lazzaro, Charles Preston Neff, Nichole Nusbacher, Kathryn Boyd, Suzanne Fiorillo, Casey Martin, Janet C Siebert, Thomas B Campbell, Margaret Borok, Brent E Palmer, Catherine Lozupone
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. Microbiome 12 (1) (2024)
Naheed Tabassum, Hanin Ibrahim Ahmed, Sabiha Parween, Arsheed H Sheikh, Maged M Saad, Simon G Krattinger, Heribert Hirt
Host genotype, soil composition, and geo-climatic factors shape the fonio seed microbiome. Microbiome 12 (1) (2024)
Naheed Tabassum, Hanin Ibrahim Ahmed, Sabiha Parween, Arsheed H Sheikh, Maged M Saad, Simon G Krattinger, Heribert Hirt
Host genotype, soil composition, and geo-climatic factors shape the fonio seed microbiome. Microbiome 12 (1) (2024)
Gilda Varliero, Pedro H Lebre, Byron Adams, Steven L Chown, Peter Convey, Paul G Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D Hogg, David W Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K Newsham, Mark I Stevens, Katherine V Weigh, Don A Cowan
Biogeographic survey of soil bacterial communities across Antarctica. Microbiome 12 (1) (2024)
Changfeng Zhang, Marcel G A van der Heijden, Bethany K Dodds, Thi Bich Nguyen, Jelle Spooren, Alain Valzano-Held, Marco Cosme, Roeland L Berendsen
A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization. Microbiome 12 (1) (2024)
Gilda Varliero, Pedro H Lebre, Byron Adams, Steven L Chown, Peter Convey, Paul G Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D Hogg, David W Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K Newsham, Mark I Stevens, Katherine V Weigh, Don A Cowan
Biogeographic survey of soil bacterial communities across Antarctica. Microbiome 12 (1) (2024)
Gilda Varliero, Pedro H Lebre, Byron Adams, Steven L Chown, Peter Convey, Paul G Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D Hogg, David W Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K Newsham, Mark I Stevens, Katherine V Weigh, Don A Cowan
Biogeographic survey of soil bacterial communities across Antarctica. Microbiome 12 (1) (2024)
Jiahui Chen, Yingying Sun, Jie Li, Mengge Lyu, Li Yuan, Jiancheng Sun, Shangqi Chen, Can Hu, Qing Wei, Zhiyuan Xu, Tiannan Guo, Xiangdong Cheng
In-depth metaproteomics analysis of tongue coating for gastric cancer: a multicenter diagnostic research study. Microbiome 12 (1) (2024)
Dhrati V Patangia, Ghjuvan Grimaud, Carol-Anne O'Shea, C A Ryan, Eugene Dempsey, Catherine Stanton, R Paul Ross
Early life exposure of infants to benzylpenicillin and gentamicin is associated with a persistent amplification of the gut resistome. Microbiome 12 (1) (2024)
S L Tsola, Y Zhu, Y Chen, I A Sanders, C K Economou, V Brüchert, Ö Eyice
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments. Microbiome 12 (1) (2024)
Erica Bonazzi, Alexis Bretin, Lucile Vigué, Fuhua Hao, Andrew D Patterson, Andrew T Gewirtz, Benoit Chassaing
Individualized microbiotas dictate the impact of dietary fiber on colitis sensitivity. Microbiome 12 (1) (2024)
Angela Sofia Burkhart Colorado, Alessandro Lazzaro, Charles Preston Neff, Nichole Nusbacher, Kathryn Boyd, Suzanne Fiorillo, Casey Martin, Janet C Siebert, Thomas B Campbell, Margaret Borok, Brent E Palmer, Catherine Lozupone
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. Microbiome 12 (1) (2024)
Eitan E Asher, Amir Bashan
Model-free prediction of microbiome compositions. Microbiome 12 (1) (2024)
Jiahui Chen, Yingying Sun, Jie Li, Mengge Lyu, Li Yuan, Jiancheng Sun, Shangqi Chen, Can Hu, Qing Wei, Zhiyuan Xu, Tiannan Guo, Xiangdong Cheng
In-depth metaproteomics analysis of tongue coating for gastric cancer: a multicenter diagnostic research study. Microbiome 12 (1) (2024)
Runxiang Xie, Yu Gu, Mengfan Li, Lingfeng Li, Yunwei Yang, Yue Sun, Bingqian Zhou, Tianyu Liu, Sinan Wang, Wentian Liu, Rongcun Yang, Xiaomin Su, Weilong Zhong, Bangmao Wang, Hailong Cao
Desulfovibrio vulgaris interacts with novel gut epithelial immune receptor LRRC19 and exacerbates colitis. Microbiome 12 (1) (2024)
Runxiang Xie, Yu Gu, Mengfan Li, Lingfeng Li, Yunwei Yang, Yue Sun, Bingqian Zhou, Tianyu Liu, Sinan Wang, Wentian Liu, Rongcun Yang, Xiaomin Su, Weilong Zhong, Bangmao Wang, Hailong Cao
Desulfovibrio vulgaris interacts with novel gut epithelial immune receptor LRRC19 and exacerbates colitis. Microbiome 12 (1) (2024)
Abdelrahman Alahmad, Mourad Harir, Sylvain Fochesato, Joris Tulumello, Alesia Walker, Mohamed Barakat, Papa Mamadou Sitor Ndour, Philippe Schmitt-Kopplin, Laurent Cournac, Laurent Laplaze, Thierry Heulin, Wafa Achouak
Unraveling the interplay between root exudates, microbiota, and rhizosheath formation in pearl millet. Microbiome 12 (1) (2024)