Frontiers in bioinformatics

Keyphrases

Publications

volume 4, 2024

Ruofan Cao, Yide Zhang, Jessica Houston
Editorial: Phasor analysis for fluorescence lifetime data. Frontiers in bioinformatics 4 (2024)
Jannes Peeters, Daniël M Bot, Gustavo Rovelo Ruiz, Jan Aerts
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs. Frontiers in bioinformatics 4 (2024)
Alban Obel Slabowska, Charles Pyke, Henning Hvid, Leon Eyrich Jessen, Simon Baumgart, Vivek Das
A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease. Frontiers in bioinformatics 4 (2024)
Wouter-Michiel A M Vierdag, Sinem K Saka
A perspective on FAIR quality control in multiplexed imaging data processing. Frontiers in bioinformatics 4 (2024)
Neta Zadok, Gil Ast, Roded Sharan
A network-based method for associating genes with autism spectrum disorder. Frontiers in bioinformatics 4 (2024)
Ruofan Cao, Yide Zhang, Jessica Houston
Editorial: Phasor analysis for fluorescence lifetime data. Frontiers in bioinformatics 4 (2024)
A L Swan, A Broadbent, P Singh Gaur, A Mishra, K Gurwitz, A Mithani, S L Morgan, G Malhotra, C Brooksbank
Making bioinformatics training FAIR: the EMBL-EBI training portal. Frontiers in bioinformatics 4 (2024)
Lajoyce Mboning, Liudmilla Rubbi, Michael Thompson, Louis-S Bouchard, Matteo Pellegrini
BayesAge: A maximum likelihood algorithm to predict epigenetic age. Frontiers in bioinformatics 4 (2024)
Gennaro Calendo, Dara Kusic, Jozef Madzo, Neda Gharani, Laura Scheinfeldt
ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data. Frontiers in bioinformatics 4 (2024)
Gennaro Calendo, Dara Kusic, Jozef Madzo, Neda Gharani, Laura Scheinfeldt
ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data. Frontiers in bioinformatics 4 (2024)
Sarah von Löhneysen, Mario Mörl, Peter F Stadler
Limits of experimental evidence in RNA secondary structure prediction. Frontiers in bioinformatics 4 (2024)
Marin Truchi, Caroline Lacoux, Cyprien Gille, Julien Fassy, Virginie Magnone, Rafael Lopes Goncalves, Cédric Girard-Riboulleau, Iris Manosalva-Pena, Marine Gautier-Isola, Kevin Lebrigand, Pascal Barbry, Salvatore Spicuglia, Georges Vassaux, Roger Rezzonico, Michel Barlaud, Bernard Mari
Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network. Frontiers in bioinformatics 4 (2024)
Wouter-Michiel A M Vierdag, Sinem K Saka
A perspective on FAIR quality control in multiplexed imaging data processing. Frontiers in bioinformatics 4 (2024)
Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P S Raghava
MRSLpred-a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. Frontiers in bioinformatics 4 (2024)
Kai O Kreissner, Benjamin Faller, Ivan Talucci, Hans M Maric
MARTin-an open-source platform for microarray analysis. Frontiers in bioinformatics 4 (2024)
Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Isabel Bermudez-Santana
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. Frontiers in bioinformatics 4 (2024)
Jannes Peeters, Daniël M Bot, Gustavo Rovelo Ruiz, Jan Aerts
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs. Frontiers in bioinformatics 4 (2024)
Shamini Hemandhar Kumar, Ines Tapken, Daniela Kuhn, Peter Claus, Klaus Jung
bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses. Frontiers in bioinformatics 4 (2024)
Shamini Hemandhar Kumar, Ines Tapken, Daniela Kuhn, Peter Claus, Klaus Jung
bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses. Frontiers in bioinformatics 4 (2024)
Samuel D Chorlton
Ten common issues with reference sequence databases and how to mitigate them. Frontiers in bioinformatics 4 (2024)
Kevan Baker, Nathaniel Hughes, Sutanu Bhattacharya
An interactive visualization tool for educational outreach in protein contact map overlap analysis. Frontiers in bioinformatics 4 (2024)
Neta Zadok, Gil Ast, Roded Sharan
A network-based method for associating genes with autism spectrum disorder. Frontiers in bioinformatics 4 (2024)
Michael Olbrich, Lennart Bartels, Inken Wohlers
Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research. Frontiers in bioinformatics 4 (2024)
Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Italo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio, Claudio Franceschi, Gastone Castellani, Paolo Garagnani, Christine Nardini
Where are we in the implementation of tissue-specific epigenetic clocks? Frontiers in bioinformatics 4 (2024)
Marin Truchi, Caroline Lacoux, Cyprien Gille, Julien Fassy, Virginie Magnone, Rafael Lopes Goncalves, Cédric Girard-Riboulleau, Iris Manosalva-Pena, Marine Gautier-Isola, Kevin Lebrigand, Pascal Barbry, Salvatore Spicuglia, Georges Vassaux, Roger Rezzonico, Michel Barlaud, Bernard Mari
Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network. Frontiers in bioinformatics 4 (2024)
Sarah von Löhneysen, Mario Mörl, Peter F Stadler
Limits of experimental evidence in RNA secondary structure prediction. Frontiers in bioinformatics 4 (2024)
Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Italo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio, Claudio Franceschi, Gastone Castellani, Paolo Garagnani, Christine Nardini
Where are we in the implementation of tissue-specific epigenetic clocks? Frontiers in bioinformatics 4 (2024)
Rang Li, Sabrina Wilderotter, Madison Stoddard, Debra Van Egeren, Arijit Chakravarty, Diane Joseph-McCarthy
Computational identification of antibody-binding epitopes from mimotope datasets. Frontiers in bioinformatics 4 (2024)
Kai O Kreissner, Benjamin Faller, Ivan Talucci, Hans M Maric
MARTin-an open-source platform for microarray analysis. Frontiers in bioinformatics 4 (2024)
Lajoyce Mboning, Liudmilla Rubbi, Michael Thompson, Louis-S Bouchard, Matteo Pellegrini
BayesAge: A maximum likelihood algorithm to predict epigenetic age. Frontiers in bioinformatics 4 (2024)
Michael S Rosenberg
MetaWin 3: open-source software for meta-analysis. Frontiers in bioinformatics 4 (2024)
Michael S Rosenberg
MetaWin 3: open-source software for meta-analysis. Frontiers in bioinformatics 4 (2024)
Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P S Raghava
MRSLpred-a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. Frontiers in bioinformatics 4 (2024)
Hayet Belghit, Mariano Spivak, Manuel Dauchez, Marc Baaden, Jessica Jonquet-Prevoteau
From complex data to clear insights: visualizing molecular dynamics trajectories. Frontiers in bioinformatics 4 (2024)
Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Isabel Bermudez-Santana
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. Frontiers in bioinformatics 4 (2024)
A L Swan, A Broadbent, P Singh Gaur, A Mishra, K Gurwitz, A Mithani, S L Morgan, G Malhotra, C Brooksbank
Making bioinformatics training FAIR: the EMBL-EBI training portal. Frontiers in bioinformatics 4 (2024)
Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin
AlignScape, displaying sequence similarity using self-organizing maps. Frontiers in bioinformatics 4 (2024)
Alban Obel Slabowska, Charles Pyke, Henning Hvid, Leon Eyrich Jessen, Simon Baumgart, Vivek Das
A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease. Frontiers in bioinformatics 4 (2024)
Shamini Hemandhar Kumar, Ines Tapken, Daniela Kuhn, Peter Claus, Klaus Jung
bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses. Frontiers in bioinformatics 4 (2024)
Lajoyce Mboning, Liudmilla Rubbi, Michael Thompson, Louis-S Bouchard, Matteo Pellegrini
BayesAge: A maximum likelihood algorithm to predict epigenetic age. Frontiers in bioinformatics 4 (2024)
Alban Obel Slabowska, Charles Pyke, Henning Hvid, Leon Eyrich Jessen, Simon Baumgart, Vivek Das
A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease. Frontiers in bioinformatics 4 (2024)
Hayet Belghit, Mariano Spivak, Manuel Dauchez, Marc Baaden, Jessica Jonquet-Prevoteau
From complex data to clear insights: visualizing molecular dynamics trajectories. Frontiers in bioinformatics 4 (2024)
Kevan Baker, Nathaniel Hughes, Sutanu Bhattacharya
An interactive visualization tool for educational outreach in protein contact map overlap analysis. Frontiers in bioinformatics 4 (2024)
Samuel D Chorlton
Ten common issues with reference sequence databases and how to mitigate them. Frontiers in bioinformatics 4 (2024)
Fengyuan Huang, Robert S Welner, Jake Y Chen, Zongliang Yue
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. Frontiers in bioinformatics 4 (2024)
Fengyuan Huang, Robert S Welner, Jake Y Chen, Zongliang Yue
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. Frontiers in bioinformatics 4 (2024)
Michael Olbrich, Lennart Bartels, Inken Wohlers
Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research. Frontiers in bioinformatics 4 (2024)
Lieke Michielsen, Marcel J T Reinders, Ahmed Mahfouz
Predicting cell population-specific gene expression from genomic sequence. Frontiers in bioinformatics 4 (2024)
Lieke Michielsen, Marcel J T Reinders, Ahmed Mahfouz
Predicting cell population-specific gene expression from genomic sequence. Frontiers in bioinformatics 4 (2024)
Rang Li, Sabrina Wilderotter, Madison Stoddard, Debra Van Egeren, Arijit Chakravarty, Diane Joseph-McCarthy
Computational identification of antibody-binding epitopes from mimotope datasets. Frontiers in bioinformatics 4 (2024)