ISME communications

Keyphrases

Publications

volume 4, number 1, 2024

Josselin Bodilis, Olwen Simenel, Serge Michalet, Elisabeth Brothier, Thibault Meyer, Sabine Favre-Bonté, Sylvie Nazaret
HME, NFE, and HAE-1 efflux pumps in Gram-negative bacteria: a comprehensive phylogenetic and ecological approach. ISME communications 4 (1) (2024)
Kuiyan Liu, Shuya Liu, Zongmei Cui, Yongfang Zhao, Nansheng Chen
Rich diversity and active spatial-temporal dynamics of Thalassiosira species revealed by time-series metabarcoding analysis. ISME communications 4 (1) (2024)
Linnea F M Kop, Hanna Koch, Mike S M Jetten, Holger Daims, Sebastian Lücker
Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses. ISME communications 4 (1) (2024)
Pernille Kjersgaard Bech, Scott A Jarmusch, Jacob Agerbo Rasmussen, Morten Tønsberg Limborg, Lone Gram, Nathalie N Suhr Eiris Henriksen
Succession of microbial community composition and secondary metabolism during marine biofilm development. ISME communications 4 (1) (2024)
Clemens Schauberger, Bo Thamdrup, Clarisse Lemonnier, Blandine Trouche, Julie Poulain, Patrick Wincker, Sophie Arnaud-Haond, Ronnie N Glud, Loïs Maignien
Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions. ISME communications 4 (1) (2024)
Florent Mazel, Camille Pitteloud, Antoine Guisan, Loïc Pellissier
Contrasted host specificity of gut and endosymbiont bacterial communities in alpine grasshoppers and crickets. ISME communications 4 (1) (2024)
Xinwei Zang, Huizeng Sun, Mingyuan Xue, Shulin Liang, Le Luo Guan, Jianxin Liu
Genotype-associated heritable rumen bacteria can be a stable microbiota passed to the offspring. ISME communications 4 (1) (2024)
Changhai Duan, Yang Liu, Ying Liu, Lirui Liu, Mingwei Cai, Rui Zhang, Qinglu Zeng, Eugene V Koonin, Mart Krupovic, Meng Li
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. ISME communications 4 (1) (2024)
Claudia Wood, Alyssa Bruinink, Elizabeth Trembath-Reichert, Mary Beth Wilhelm, Chanel Vidal, Edward Balaban, Christopher P McKay, Robert Swan, Barney Swan, Jackie Goordial
Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. ISME communications 4 (1) (2024)
Mamoru Oshiki, Emi Morimoto, Kanae Kobayashi, Hisashi Satoh, Satoshi Okabe
Collaborative metabolisms of urea and cyanate degradation in marine anammox bacterial culture. ISME communications 4 (1) (2024)
Charles Le Bras, Lucie Rault, Nolwenn Jacquet, Nathalie Daniel, Victoria Chuat, Florence Valence, Amandine Bellanger, Latifa Bousarghin, Sophie Blat, Yves Le Loir, Isabelle Le Huërou-Luron, Sergine Even
Two human milk-like synthetic bacterial communities displayed contrasted impacts on barrier and immune responses in an intestinal quadricellular model. ISME communications 4 (1) (2024)
Susanne A Kraemer, Arthi Ramachandran, Vera E Onana, William K W Li, David A Walsh
A multiyear time series (2004-2012) of bacterial and archaeal community dynamics in a changing Arctic Ocean. ISME communications 4 (1) (2024)
Ibuki Hayashi, Hiroaki Fujita, Hirokazu Toju
Deterministic and stochastic processes generating alternative states of microbiomes. ISME communications 4 (1) (2024)
Meriel Jennifer Bittner, Catherine C Bannon, Elden Rowland, John Sundh, Erin M Bertrand, Anders F Andersson, Ryan W Paerl, Lasse Riemann
New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system. ISME communications 4 (1) (2024)
Willem R Miellet, Rob Mariman, Janieke van Veldhuizen, Paul Badoux, Alienke J Wijmenga-Monsuur, David Litt, Thijs Bosch, Elizabeth Miller, Norman K Fry, Marianne A van Houten, Nynke Y Rots, Elisabeth A M Sanders, Krzysztof Trzciński
Impact of age on pneumococcal colonization of the nasopharynx and oral cavity: an ecological perspective. ISME communications 4 (1) (2024)
Changhai Duan, Yang Liu, Ying Liu, Lirui Liu, Mingwei Cai, Rui Zhang, Qinglu Zeng, Eugene V Koonin, Mart Krupovic, Meng Li
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. ISME communications 4 (1) (2024)
Rebecca J Duncan, Daniel Nielsen, Janne E Søreide, Øystein Varpe, Mark J Tobin, Vanessa Pitusi, Philip Heraud, Katherina Petrou
Biomolecular profiles of Arctic sea-ice diatoms highlight the role of under-ice light in cellular energy allocation. ISME communications 4 (1) (2024)
Yuanze Sun, Mochen Wu, Siyuan Xie, Jingxi Zang, Xiang Wang, Yuyi Yang, Changchao Li, Jie Wang
Homogenization of bacterial plastisphere community in soil: a continental-scale microcosm study. ISME communications 4 (1) (2024)
Po-Shun Chuang, Sheng-Ping Yu, Po-Yu Liu, Ming-Tsung Hsu, Yu-Jing Chiou, Chih-Ying Lu, Sen-Lin Tang
A gauge of coral physiology: re-examining temporal changes in Endozoicomonas abundance correlated with natural coral bleaching. ISME communications 4 (1) (2024)
Chris R P Robinson, Adam G Dolezal, Irene L G Newton
Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations. ISME communications 4 (1) (2024)
Mamoru Oshiki, Emi Morimoto, Kanae Kobayashi, Hisashi Satoh, Satoshi Okabe
Collaborative metabolisms of urea and cyanate degradation in marine anammox bacterial culture. ISME communications 4 (1) (2024)
Timothée Chaumier, Feng Yang, Eric Manirakiza, Ouardia Ait-Mohamed, Yue Wu, Udita Chandola, Bruno Jesus, Gwenael Piganeau, Agnès Groisillier, Leila Tirichine
Genome-wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom Phaeodactylum tricornutum . ISME communications 4 (1) (2024)
Claudia Wood, Alyssa Bruinink, Elizabeth Trembath-Reichert, Mary Beth Wilhelm, Chanel Vidal, Edward Balaban, Christopher P McKay, Robert Swan, Barney Swan, Jackie Goordial
Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. ISME communications 4 (1) (2024)
Yuto Fukuyama, Shigeru Shimamura, Sanae Sakai, Yuta Michimori, Tomomi Sumida, Yoshito Chikaraishi, Haruyuki Atomi, Takuro Nunoura
Development of a rapid and highly accurate method for 13 C tracer-based metabolomics and its application on a hydrogenotrophic methanogen. ISME communications 4 (1) (2024)
Romain Jouan, Gaëlle Lextrait, Joy Lachat, Aya Yokota, Raynald Cossard, Delphine Naquin, Tatiana Timchenko, Yoshitomo Kikuchi, Tsubasa Ohbayashi, Peter Mergaert
Transposon sequencing reveals the essential gene set and genes enabling gut symbiosis in the insect symbiont Caballeronia insecticola . ISME communications 4 (1) (2024)
Ibuki Hayashi, Hiroaki Fujita, Hirokazu Toju
Deterministic and stochastic processes generating alternative states of microbiomes. ISME communications 4 (1) (2024)
Clemens Schauberger, Bo Thamdrup, Clarisse Lemonnier, Blandine Trouche, Julie Poulain, Patrick Wincker, Sophie Arnaud-Haond, Ronnie N Glud, Loïs Maignien
Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions. ISME communications 4 (1) (2024)
Charles Le Bras, Lucie Rault, Nolwenn Jacquet, Nathalie Daniel, Victoria Chuat, Florence Valence, Amandine Bellanger, Latifa Bousarghin, Sophie Blat, Yves Le Loir, Isabelle Le Huërou-Luron, Sergine Even
Two human milk-like synthetic bacterial communities displayed contrasted impacts on barrier and immune responses in an intestinal quadricellular model. ISME communications 4 (1) (2024)
Meriel Jennifer Bittner, Catherine C Bannon, Elden Rowland, John Sundh, Erin M Bertrand, Anders F Andersson, Ryan W Paerl, Lasse Riemann
New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system. ISME communications 4 (1) (2024)
Sean R Anderson, Leocadio Blanco-Bercial, Craig A Carlson, Elizabeth L Harvey
Role of Syndiniales parasites in depth-specific networks and carbon flux in the oligotrophic ocean. ISME communications 4 (1) (2024)
Pernille Kjersgaard Bech, Scott A Jarmusch, Jacob Agerbo Rasmussen, Morten Tønsberg Limborg, Lone Gram, Nathalie N Suhr Eiris Henriksen
Succession of microbial community composition and secondary metabolism during marine biofilm development. ISME communications 4 (1) (2024)
Willem R Miellet, Rob Mariman, Janieke van Veldhuizen, Paul Badoux, Alienke J Wijmenga-Monsuur, David Litt, Thijs Bosch, Elizabeth Miller, Norman K Fry, Marianne A van Houten, Nynke Y Rots, Elisabeth A M Sanders, Krzysztof Trzciński
Impact of age on pneumococcal colonization of the nasopharynx and oral cavity: an ecological perspective. ISME communications 4 (1) (2024)
Florent Mazel, Camille Pitteloud, Antoine Guisan, Loïc Pellissier
Contrasted host specificity of gut and endosymbiont bacterial communities in alpine grasshoppers and crickets. ISME communications 4 (1) (2024)
Sean R Anderson, Leocadio Blanco-Bercial, Craig A Carlson, Elizabeth L Harvey
Role of Syndiniales parasites in depth-specific networks and carbon flux in the oligotrophic ocean. ISME communications 4 (1) (2024)
Changhai Duan, Yang Liu, Ying Liu, Lirui Liu, Mingwei Cai, Rui Zhang, Qinglu Zeng, Eugene V Koonin, Mart Krupovic, Meng Li
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. ISME communications 4 (1) (2024)
Josselin Bodilis, Olwen Simenel, Serge Michalet, Elisabeth Brothier, Thibault Meyer, Sabine Favre-Bonté, Sylvie Nazaret
HME, NFE, and HAE-1 efflux pumps in Gram-negative bacteria: a comprehensive phylogenetic and ecological approach. ISME communications 4 (1) (2024)
Yuanze Sun, Mochen Wu, Siyuan Xie, Jingxi Zang, Xiang Wang, Yuyi Yang, Changchao Li, Jie Wang
Homogenization of bacterial plastisphere community in soil: a continental-scale microcosm study. ISME communications 4 (1) (2024)
Po-Shun Chuang, Sheng-Ping Yu, Po-Yu Liu, Ming-Tsung Hsu, Yu-Jing Chiou, Chih-Ying Lu, Sen-Lin Tang
A gauge of coral physiology: re-examining temporal changes in Endozoicomonas abundance correlated with natural coral bleaching. ISME communications 4 (1) (2024)
Rebecca J Duncan, Daniel Nielsen, Janne E Søreide, Øystein Varpe, Mark J Tobin, Vanessa Pitusi, Philip Heraud, Katherina Petrou
Biomolecular profiles of Arctic sea-ice diatoms highlight the role of under-ice light in cellular energy allocation. ISME communications 4 (1) (2024)
Xinwei Zang, Huizeng Sun, Mingyuan Xue, Shulin Liang, Le Luo Guan, Jianxin Liu
Genotype-associated heritable rumen bacteria can be a stable microbiota passed to the offspring. ISME communications 4 (1) (2024)
Linnea F M Kop, Hanna Koch, Mike S M Jetten, Holger Daims, Sebastian Lücker
Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses. ISME communications 4 (1) (2024)
Catalina Mena, Ona Deulofeu-Capo, Irene Forn, Júlia Dordal-Soriano, Yulieth A Mantilla-Arias, Iván P Samos, Marta Sebastián, Clara Cardelús, Ramon Massana, Cristina Romera-Castillo, Rebeca Mallenco-Fornies, Josep M Gasol, Clara Ruiz-González
High amino acid osmotrophic incorporation by marine eukaryotic phytoplankton revealed by click chemistry. ISME communications 4 (1) (2024)
Chris R P Robinson, Adam G Dolezal, Irene L G Newton
Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations. ISME communications 4 (1) (2024)
Timothée Chaumier, Feng Yang, Eric Manirakiza, Ouardia Ait-Mohamed, Yue Wu, Udita Chandola, Bruno Jesus, Gwenael Piganeau, Agnès Groisillier, Leila Tirichine
Genome-wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom Phaeodactylum tricornutum . ISME communications 4 (1) (2024)
Claudia Wood, Alyssa Bruinink, Elizabeth Trembath-Reichert, Mary Beth Wilhelm, Chanel Vidal, Edward Balaban, Christopher P McKay, Robert Swan, Barney Swan, Jackie Goordial
Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. ISME communications 4 (1) (2024)
Catalina Mena, Ona Deulofeu-Capo, Irene Forn, Júlia Dordal-Soriano, Yulieth A Mantilla-Arias, Iván P Samos, Marta Sebastián, Clara Cardelús, Ramon Massana, Cristina Romera-Castillo, Rebeca Mallenco-Fornies, Josep M Gasol, Clara Ruiz-González
High amino acid osmotrophic incorporation by marine eukaryotic phytoplankton revealed by click chemistry. ISME communications 4 (1) (2024)
Kuiyan Liu, Shuya Liu, Zongmei Cui, Yongfang Zhao, Nansheng Chen
Rich diversity and active spatial-temporal dynamics of Thalassiosira species revealed by time-series metabarcoding analysis. ISME communications 4 (1) (2024)
Susanne A Kraemer, Arthi Ramachandran, Vera E Onana, William K W Li, David A Walsh
A multiyear time series (2004-2012) of bacterial and archaeal community dynamics in a changing Arctic Ocean. ISME communications 4 (1) (2024)
Yuto Fukuyama, Shigeru Shimamura, Sanae Sakai, Yuta Michimori, Tomomi Sumida, Yoshito Chikaraishi, Haruyuki Atomi, Takuro Nunoura
Development of a rapid and highly accurate method for 13 C tracer-based metabolomics and its application on a hydrogenotrophic methanogen. ISME communications 4 (1) (2024)
Romain Jouan, Gaëlle Lextrait, Joy Lachat, Aya Yokota, Raynald Cossard, Delphine Naquin, Tatiana Timchenko, Yoshitomo Kikuchi, Tsubasa Ohbayashi, Peter Mergaert
Transposon sequencing reveals the essential gene set and genes enabling gut symbiosis in the insect symbiont Caballeronia insecticola . ISME communications 4 (1) (2024)