Agata P Perlinska

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 9

Top Topics

Molecular Docking

Protein Protein

Respiratory Syndrome Coronavirus

Machine Learning

Top Venues

PLoS computational biology

Nucleic acids research

Protein science : a publication of the Protein Society

This page only lists publications with an associated author ORCID identifier.

Publications

Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, Agata P Perlinska, Joanna Ida Sulkowska
AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models. Nucleic acids research (2024)
Maciej Sikora, Eva Klimentova, Dawid Uchal, Denisa Sramkova, Agata P Perlinska, Mai Lan Nguyen, Marta Korpacz, Roksana Malinowska, Szymon Nowakowski, Pawel Rubach, Petr Šimeček, Joanna Ida Sulkowska
Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model. Protein science : a publication of the Protein Society 33 (7) (2024)
Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, Agata P Perlinska, Joanna Ida Sulkowska
AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models. Nucleic acids research 52 (W1) (2024)
Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, Agata P Perlinska, Joanna Ida Sulkowska
AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models. Nucleic acids research 52 (W1) (2024)
Maciej Sikora, Eva Klimentova, Dawid Uchal, Denisa Sramkova, Agata P Perlinska, Mai Lan Nguyen, Marta Korpacz, Roksana Malinowska, Szymon Nowakowski, Pawel Rubach, Petr Šimeček, Joanna Ida Sulkowska
Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model. Protein science : a publication of the Protein Society 33 (7) (2024)
Agata P Perlinska, Wanda H Niemyska, Bartosz A Gren, Marek Bukowicki, Szymon Nowakowski, Pawel Rubach, Joanna I Sulkowska
AlphaFold predicts novel human proteins with knots. Protein science : a publication of the Protein Society (2023)
Agata P Perlinska, Adam Stasiulewicz, Mai Lan Nguyen, Karolina W Swiderska, Mikolaj Zmudzinski, Alicja W Maksymiuk, Marcin Dra G, Joanna Ida Sulkowska
Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding. PLoS computational biology 18 (11) (2022)
Vasilina Zayats, Agata P Perlinska, Aleksandra I Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna Ida Sulkowska
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS computational biology 17 (10) (2021)
Agata P Perlinska, Adam Stasiulewicz, Ewa Klaudia Nawrocka, Krzysztof Kazimierczuk, Piotr Setny, Joanna I Sulkowska
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites. PLoS computational biology 16 (5) (2020)