Protein science : a publication of the Protein Society

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Publications

volume 33, number 9, 2024

Cai You, Yunjun Pan, Ruxin Liu, Shengying Li, Yingang Feng
Structural basis for substrate flexibility of the O-methyltransferase MpaG' involved in mycophenolic acid biosynthesis. Protein science : a publication of the Protein Society 33 (9) (2024)
Nadun C Karunatilleke, Anne Brickenden, Wing-Yiu Choy
Molecular basis of the interactions between the disordered Neh4 and Neh5 domains of Nrf2 and CBP/p300 in oxidative stress response. Protein science : a publication of the Protein Society 33 (9) (2024)
Cai You, Yunjun Pan, Ruxin Liu, Shengying Li, Yingang Feng
Structural basis for substrate flexibility of the O-methyltransferase MpaG' involved in mycophenolic acid biosynthesis. Protein science : a publication of the Protein Society 33 (9) (2024)
Giulia Giubertoni, Sarah Chagri, Pablo G Argudo, Leon Prädel, Daria Maltseva, Alessandro Greco, Federico Caporaletti, Alberto Pavan, Ioana M Ilie, Yong Ren, David Y W Ng, Mischa Bonn, Tanja Weil, Sander Woutersen
Structural adaptability and surface activity of peptides derived from tardigrade proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Ran Xu, Qican Pan, Guoliang Zhu, Yilin Ye, Minghui Xin, Zechen Wang, Sheng Wang, Weifeng Li, Yanjie Wei, Jingjing Guo, Liangzhen Zheng
ThermoLink: Bridging disulfide bonds and enzyme thermostability through database construction and machine learning prediction. Protein science : a publication of the Protein Society 33 (9) (2024)
Xun Sun, James A Ferguson, Ke Yang, Robyn L Stanfield, H Jane Dyson, Peter E Wright
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer. Protein science : a publication of the Protein Society 33 (9) (2024)
Anukool A Bhopatkar, Nemil Bhatt, Md Anzarul Haque, Rhea Xavier, Leiana Fung, Cynthia Jerez, Rakez Kayed
MAPT mutations associated with familial tauopathies lead to formation of conformationally distinct oligomers that have cross-seeding ability. Protein science : a publication of the Protein Society 33 (9) (2024)
Jun Min Liao, Shih-Ting Hong, Yeng-Tseng Wang, Yi-An Cheng, Kai-Wen Ho, Shu-Ing Toh, Orion Shih, U-Ser Jeng, Ping-Chiang Lyu, I-Chen Hu, Ming-Yii Huang, Chin-Yuan Chang, Tian-Lu Cheng
Integrating molecular dynamics simulation with small- and wide-angle X-ray scattering to unravel the flexibility, antigen-blocking, and protease-restoring functions in a hindrance-based pro-antibody. Protein science : a publication of the Protein Society 33 (9) (2024)
Anukool A Bhopatkar, Nemil Bhatt, Md Anzarul Haque, Rhea Xavier, Leiana Fung, Cynthia Jerez, Rakez Kayed
MAPT mutations associated with familial tauopathies lead to formation of conformationally distinct oligomers that have cross-seeding ability. Protein science : a publication of the Protein Society 33 (9) (2024)
Jorge Alejandro Pérez-Niño, Yasel Guerra, A Jessica Díaz-Salazar, Miguel Costas, Adela Rodríguez-Romero, Daniel Alejandro Fernández-Velasco
Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Pawel Dabrowski-Tumanski, Dimos Goundaroulis, Andrzej Stasiak, Eric J Rawdon, Joanna Ida Sulkowska
Theta-curves in proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Jun Min Liao, Shih-Ting Hong, Yeng-Tseng Wang, Yi-An Cheng, Kai-Wen Ho, Shu-Ing Toh, Orion Shih, U-Ser Jeng, Ping-Chiang Lyu, I-Chen Hu, Ming-Yii Huang, Chin-Yuan Chang, Tian-Lu Cheng
Integrating molecular dynamics simulation with small- and wide-angle X-ray scattering to unravel the flexibility, antigen-blocking, and protease-restoring functions in a hindrance-based pro-antibody. Protein science : a publication of the Protein Society 33 (9) (2024)
Anukool A Bhopatkar, Nemil Bhatt, Md Anzarul Haque, Rhea Xavier, Leiana Fung, Cynthia Jerez, Rakez Kayed
MAPT mutations associated with familial tauopathies lead to formation of conformationally distinct oligomers that have cross-seeding ability. Protein science : a publication of the Protein Society 33 (9) (2024)
Simeon Minic, Luka Velickovic, Burkhard Annighöfer, Aurélien Thureau, Nikola Gligorijević, Zorana Jovanovic, Annie Brûlet, Sophie Combet
Probing the structural stability of R-phycocyanin under pressure. Protein science : a publication of the Protein Society 33 (9) (2024)
Iracema Caballero, Albert Castellví, Josep Triviño, Elisabet Jiménez, Nicolas Soler, Rafael Borges, Isabel Usón
ARCIMBOLDO at low resolution: Verification for coiled coils and globular proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Jorge Alejandro Pérez-Niño, Yasel Guerra, A Jessica Díaz-Salazar, Miguel Costas, Adela Rodríguez-Romero, Daniel Alejandro Fernández-Velasco
Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Nicola Bordin, Harry Scholes, Clemens Rauer, Joel Roca-Martinez, Ian Sillitoe, Christine Orengo
Clustering protein functional families at large scale with hierarchical approaches. Protein science : a publication of the Protein Society 33 (9) (2024)
Iracema Caballero, Albert Castellví, Josep Triviño, Elisabet Jiménez, Nicolas Soler, Rafael Borges, Isabel Usón
ARCIMBOLDO at low resolution: Verification for coiled coils and globular proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Nam Hyuk Kim, Goeun Shim, Ga Hyeon Park, Yeon Gyu Yu
A nondestructive membrane engineering method using an amphiphilic polymer. Protein science : a publication of the Protein Society 33 (9) (2024)
Xun Sun, James A Ferguson, Ke Yang, Robyn L Stanfield, H Jane Dyson, Peter E Wright
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer. Protein science : a publication of the Protein Society 33 (9) (2024)
Danielle F Kay, Adem Ozleyen, Cristina Matas De Las Heras, Richard G Doveston, Aneika C Leney
Dissecting the functional behavior of the differentially phosphorylated prolyl isomerase, Pin1. Protein science : a publication of the Protein Society 33 (9) (2024)
Jun Min Liao, Shih-Ting Hong, Yeng-Tseng Wang, Yi-An Cheng, Kai-Wen Ho, Shu-Ing Toh, Orion Shih, U-Ser Jeng, Ping-Chiang Lyu, I-Chen Hu, Ming-Yii Huang, Chin-Yuan Chang, Tian-Lu Cheng
Integrating molecular dynamics simulation with small- and wide-angle X-ray scattering to unravel the flexibility, antigen-blocking, and protease-restoring functions in a hindrance-based pro-antibody. Protein science : a publication of the Protein Society 33 (9) (2024)
Simeon Minic, Luka Velickovic, Burkhard Annighöfer, Aurélien Thureau, Nikola Gligorijević, Zorana Jovanovic, Annie Brûlet, Sophie Combet
Probing the structural stability of R-phycocyanin under pressure. Protein science : a publication of the Protein Society 33 (9) (2024)
Jorge Alejandro Pérez-Niño, Yasel Guerra, A Jessica Díaz-Salazar, Miguel Costas, Adela Rodríguez-Romero, Daniel Alejandro Fernández-Velasco
Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Nicola Bordin, Harry Scholes, Clemens Rauer, Joel Roca-Martinez, Ian Sillitoe, Christine Orengo
Clustering protein functional families at large scale with hierarchical approaches. Protein science : a publication of the Protein Society 33 (9) (2024)
Marcel Lach, Michael Rütten, Tobias Beck
Tunable crystalline assemblies using surface-engineered protein cages. Protein science : a publication of the Protein Society 33 (9) (2024)
Anukool A Bhopatkar, Nemil Bhatt, Md Anzarul Haque, Rhea Xavier, Leiana Fung, Cynthia Jerez, Rakez Kayed
MAPT mutations associated with familial tauopathies lead to formation of conformationally distinct oligomers that have cross-seeding ability. Protein science : a publication of the Protein Society 33 (9) (2024)
Anastasia Mpakali, Galateia Georgaki, Alberto Buson, Alison D Findlay, Jonathan S Foot, Francois-Xavier Mauvais, Peter van Endert, Petros Giastas, Dieter W Hamprecht, Efstratios Stratikos
Stabilization of the open conformation οf insulin-regulated aminopeptidase by a novel substrate-selective small-molecule inhibitor. Protein science : a publication of the Protein Society 33 (9) (2024)
Xun Sun, James A Ferguson, Ke Yang, Robyn L Stanfield, H Jane Dyson, Peter E Wright
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer. Protein science : a publication of the Protein Society 33 (9) (2024)
Katherine Maia McCoy, Margaret E Ackerman, Gevorg Grigoryan
A comparison of antibody-antigen complex sequence-to-structure prediction methods and their systematic biases. Protein science : a publication of the Protein Society 33 (9) (2024)
Wioletta Rut, Katarzyna Groborz, Xinyuanyuan Sun, Rolf Hilgenfeld, Marcin Dra G
Profiling of coronaviral M pro and enteroviral 3C pro specificity provides a framework for the development of broad-spectrum antiviral compounds. Protein science : a publication of the Protein Society 33 (9) (2024)
Nadun C Karunatilleke, Anne Brickenden, Wing-Yiu Choy
Molecular basis of the interactions between the disordered Neh4 and Neh5 domains of Nrf2 and CBP/p300 in oxidative stress response. Protein science : a publication of the Protein Society 33 (9) (2024)
Guido Izzi, Antonella Paladino, Rosario Oliva, Giovanni Barra, Alessia Ruggiero, Pompea Del Vecchio, Luigi Vitagliano, Giuseppe Graziano
Destabilization of the D2 domain of Thermotoga maritima arginine binding protein induced by guanidinium thiocyanate and its counteraction by stabilizing agents. Protein science : a publication of the Protein Society 33 (9) (2024)
Marcel Lach, Michael Rütten, Tobias Beck
Tunable crystalline assemblies using surface-engineered protein cages. Protein science : a publication of the Protein Society 33 (9) (2024)
Xun Sun, James A Ferguson, Ke Yang, Robyn L Stanfield, H Jane Dyson, Peter E Wright
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer. Protein science : a publication of the Protein Society 33 (9) (2024)
Danielle F Kay, Adem Ozleyen, Cristina Matas De Las Heras, Richard G Doveston, Aneika C Leney
Dissecting the functional behavior of the differentially phosphorylated prolyl isomerase, Pin1. Protein science : a publication of the Protein Society 33 (9) (2024)
Matěj Danda, Anna Klimešová, Klára Kušková, Alžběta Dostálková, Aneta Pagáčová, Jan Prchal, Marina Kapisheva, Tomáš Ruml, Michaela Rumlová
Biochemical characterization of naturally occurring mutations in SARS-CoV-2 RNA-dependent RNA polymerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Alessio Incocciati, Chiara Cappelletti, Silvia Masciarelli, Francesca Liccardo, Roberta Piacentini, Alessandra Giorgi, Lucia Bertuccini, Barbara De Berardis, Francesco Fazi, Alberto Boffi, Alessandra Bonamore, Alberto Boffi
Ferritin-based disruptor nanoparticles: A novel strategy to enhance LDL cholesterol clearance via multivalent inhibition of PCSK9-LDL receptor interaction. Protein science : a publication of the Protein Society 33 (9) (2024)
Giulia Giubertoni, Sarah Chagri, Pablo G Argudo, Leon Prädel, Daria Maltseva, Alessandro Greco, Federico Caporaletti, Alberto Pavan, Ioana M Ilie, Yong Ren, David Y W Ng, Mischa Bonn, Tanja Weil, Sander Woutersen
Structural adaptability and surface activity of peptides derived from tardigrade proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Ran Xu, Qican Pan, Guoliang Zhu, Yilin Ye, Minghui Xin, Zechen Wang, Sheng Wang, Weifeng Li, Yanjie Wei, Jingjing Guo, Liangzhen Zheng
ThermoLink: Bridging disulfide bonds and enzyme thermostability through database construction and machine learning prediction. Protein science : a publication of the Protein Society 33 (9) (2024)
Guido Izzi, Antonella Paladino, Rosario Oliva, Giovanni Barra, Alessia Ruggiero, Pompea Del Vecchio, Luigi Vitagliano, Giuseppe Graziano
Destabilization of the D2 domain of Thermotoga maritima arginine binding protein induced by guanidinium thiocyanate and its counteraction by stabilizing agents. Protein science : a publication of the Protein Society 33 (9) (2024)
Anastasia Mpakali, Galateia Georgaki, Alberto Buson, Alison D Findlay, Jonathan S Foot, Francois-Xavier Mauvais, Peter van Endert, Petros Giastas, Dieter W Hamprecht, Efstratios Stratikos
Stabilization of the open conformation οf insulin-regulated aminopeptidase by a novel substrate-selective small-molecule inhibitor. Protein science : a publication of the Protein Society 33 (9) (2024)
Alessio Incocciati, Chiara Cappelletti, Silvia Masciarelli, Francesca Liccardo, Roberta Piacentini, Alessandra Giorgi, Lucia Bertuccini, Barbara De Berardis, Francesco Fazi, Alberto Boffi, Alessandra Bonamore, Alberto Boffi
Ferritin-based disruptor nanoparticles: A novel strategy to enhance LDL cholesterol clearance via multivalent inhibition of PCSK9-LDL receptor interaction. Protein science : a publication of the Protein Society 33 (9) (2024)
Wioletta Rut, Katarzyna Groborz, Xinyuanyuan Sun, Rolf Hilgenfeld, Marcin Dra G
Profiling of coronaviral M pro and enteroviral 3C pro specificity provides a framework for the development of broad-spectrum antiviral compounds. Protein science : a publication of the Protein Society 33 (9) (2024)
Pawel Dabrowski-Tumanski, Dimos Goundaroulis, Andrzej Stasiak, Eric J Rawdon, Joanna Ida Sulkowska
Theta-curves in proteins. Protein science : a publication of the Protein Society 33 (9) (2024)
Katherine Maia McCoy, Margaret E Ackerman, Gevorg Grigoryan
A comparison of antibody-antigen complex sequence-to-structure prediction methods and their systematic biases. Protein science : a publication of the Protein Society 33 (9) (2024)
Nam Hyuk Kim, Goeun Shim, Ga Hyeon Park, Yeon Gyu Yu
A nondestructive membrane engineering method using an amphiphilic polymer. Protein science : a publication of the Protein Society 33 (9) (2024)
Matěj Danda, Anna Klimešová, Klára Kušková, Alžběta Dostálková, Aneta Pagáčová, Jan Prchal, Marina Kapisheva, Tomáš Ruml, Michaela Rumlová
Biochemical characterization of naturally occurring mutations in SARS-CoV-2 RNA-dependent RNA polymerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Matěj Danda, Anna Klimešová, Klára Kušková, Alžběta Dostálková, Aneta Pagáčová, Jan Prchal, Marina Kapisheva, Tomáš Ruml, Michaela Rumlová
Biochemical characterization of naturally occurring mutations in SARS-CoV-2 RNA-dependent RNA polymerase. Protein science : a publication of the Protein Society 33 (9) (2024)
Ran Xu, Qican Pan, Guoliang Zhu, Yilin Ye, Minghui Xin, Zechen Wang, Sheng Wang, Weifeng Li, Yanjie Wei, Jingjing Guo, Liangzhen Zheng
ThermoLink: Bridging disulfide bonds and enzyme thermostability through database construction and machine learning prediction. Protein science : a publication of the Protein Society 33 (9) (2024)