Akhilesh Pandey (Kiran K Mangalaparthi)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 120

Top Venues

Proteomics

Journal of proteome research

bioRxiv : the preprint server for biology

Cancers

Mayo Clinic Rochester

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Mayo Clinic Rochester Sep 04 2019

United States

Professor :: Laboratory Medicine and Pathology

Johns Hopkins University Mar 01 2002 - Aug 10 2018

United States

Professor :: McKusick-Nathans Institute of Genetic Medicine

Education History

University of Michigan

United States

PHD

Publications

Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Michael J Hansen, Jun Zhong, Kenneth L Johnson, Roman Zenka, Akhilesh Pandey, Larry R Pease, Hu Zeng
PP2A catalytic subunit alpha is critically required for CD8 + T cell homeostasis and anti-bacterial responses. bioRxiv : the preprint server for biology (2024)
Smrita Singh, K T Shreya Parthasarathi, Mohd Younis Bhat, Champaka Gopal, Jyoti Sharma, Akhilesh Pandey
Profiling Kinase Activities for Precision Oncology in Diffuse Gastric Cancer. Omics : a journal of integrative biology 28 (2) (2024)
Rohit Budhraja, Neha Joshi, Silvia Radenkovic, Tamas Kozicz, Eva Morava, Akhilesh Pandey
Dysregulated proteome and N-glycoproteome in ALG1-deficient fibroblasts. Proteomics 24 (15) (2024)
Anikha Bellad, Kannan Rangiah, Gajanan Sathe, Gourav Dey, Pragalatha Kumar Appadorai, Hemalatha Lokanatha, Pradeep Rudra Murthy, Aruna Gowdra, Akhilesh Pandey
Identification of a rare [ G γ( A γδβ) 0 ] -thalassemia using tandem mass spectrometry. Proteomics 24 (14) (2024)
Sandhya Sukumaran, V G Vysakh, Wilson Sebastian, A Gopalakrishnan, Lalitha Hari Dharani, Akhilesh Pandey, Abhishek Kumar, J K Jena
The chromosome level genome assembly of the Asian green mussel, Perna viridis. Scientific data 11 (1) (2024)
Anikha Bellad, Kannan Rangiah, Gajanan Sathe, Gourav Dey, Pragalatha Kumar Appadorai, Hemalatha Lokanatha, Pradeep Rudra Murthy, Aruna Gowdra, Akhilesh Pandey
Identification of a rare [ G γ( A γδβ) 0 ] -thalassemia using tandem mass spectrometry. Proteomics 24 (14) (2024)
Dong-Gi Mun, Firdous A Bhat, Neha S Joshi, Leticia Sandoval, Husheng Ding, Anu Jain, Jane A Peterson, Taewook Kang, Ganesh P Pujari, Jennifer L Tomlinson, Rohit Budhraja, Roman M Zenka, Nagarajan Kannan, Benjamin R Kipp, Surendra Dasari, Alexandre Gaspar-Maia, Rory L Smoot, Richard Kumaran Kandasamy, Akhilesh Pandey
Diversity of post-translational modifications and cell signaling revealed by single cell and single organelle mass spectrometry. Communications biology 7 (1) (2024)
Syed Mohammed Musheer Aalam, Ana Rita Varela, Aalim Khaderi, Ronsard J Mondesir, Dong-Gi Mun, Andrew Ding, Isabelle M A Lombaert, Rob P Coppes, Chitra Priya Emperumal, Akhilesh Pandey, Jeffrey R Janus, Nagarajan Kannan
The Mayo Clinic Salivary Tissue-Organoid Biobanking: A Resource for Salivary Regeneration Research. bioRxiv : the preprint server for biology (2024)
Anikha Bellad, Kannan Rangiah, Gajanan Sathe, Gourav Dey, Pragalatha Kumar Appadorai, Hemalatha Lokanatha, Pradeep Rudra Murthy, Aruna Gowdra, Akhilesh Pandey
Identification of a rare [ G γ( A γδβ) 0 ] -thalassemia using tandem mass spectrometry. Proteomics (2024)
Xiaofeng Xie, Thy Truong, Siqi Huang, S Madisyn Johnston, Simon Hovanski, Abigail Robinson, Kei G I Webber, Hsien-Jung L Lin, Dong-Gi Mun, Akhilesh Pandey, Ryan T Kelly
Multicolumn Nanoflow Liquid Chromatography with Accelerated Offline Gradient Generation for Robust and Sensitive Single-Cell Proteome Profiling. Analytical chemistry 96 (26) (2024)
Syed Mohammed Musheer Aalam, Ana Rita Varela, Aalim Khaderi, Ronsard J Mondesir, Dong-Gi Mun, Andrew Zale Ding, Isabelle M A Lombaert, Rob P Coppes, Chitra Priya Emperumal, Akhilesh Pandey, Jeffery R Janus, Nagarajan Kannan
The Mayo Clinic Salivary Tissue-Organoid Biobanking: A Resource for Salivary Regeneration Research. bioRxiv : the preprint server for biology (2024)
Nicholas D Sun, Allison R Carr, Erica N Krogman, Yogesh Chawla, Jun Zhong, Matthew C Guttormson, Mark Chan, Michelle A Hsu, Haidong Dong, Dusan Bogunovic, Akhilesh Pandey, Laura M Rogers, Adrian T Ting
TBK1 and IKKε protect target cells from IFNγ-mediated T cell killing via an inflammatory apoptotic mechanism. bioRxiv : the preprint server for biology (2024)
Jinyong Kim, Seul Kee Byeon, Devin Oglesbee, Matthew J Schultz, Dietrich Matern, Akhilesh Pandey
A multiplexed targeted method for profiling of serum gangliosides and glycosphingolipids: application to GM2-gangliosidosis. Analytical and bioanalytical chemistry (2024)
Jia Jia, Wenbo Ji, Antoine N Saliba, Clifford M Csizmar, Kaiqin Ye, Lei Hu, Kevin L Peterson, Paula A Schneider, X Wei Meng, Annapoorna Venkatachalam, Mirinal S Patnaik, Jonathan A Webster, B Douglas Smith, Gabriel Ghiaur, Xinyan Wu, Jun Zhong, Akhilesh Pandey, Karen S Flatten, Qingmei Deng, Hongzhi Wang, Scott H Kaufmann, Haiming Dai
AMPK inhibition sensitizes acute leukemia cells to BH3 mimetic-induced cell death. Cell death and differentiation 31 (4) (2024)
Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Michael J Hansen, Jun Zhong, Kenneth L Johnson, Roman Zenka, Akhilesh Pandey, Larry R Pease, Hu Zeng
PP2A catalytic subunit alpha is critically required for CD8 + T cell homeostasis and anti-bacterial responses. bioRxiv : the preprint server for biology (2024)
Kishore Garapati, Anu Jain, Benjamin J Madden, Dong-Gi Mun, Jyoti Sharma, Rohit Budhraja, Akhilesh Pandey
Defining albumin as a glycoprotein with multiple N-linked glycosylation sites. Journal of translational medicine 22 (1) (2024)
Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Michael J Hansen, Jun Zhong, Kenneth L Johnson, Roman Zenka, Akhilesh Pandey, Larry R Pease, Hu Zeng
PP2A catalytic subunit alpha is critically required for CD8 + T cell homeostasis and anti-bacterial responses. bioRxiv : the preprint server for biology (2024)
Seul Kee Byeon, Jinyong Kim, Peter Jared Wegwerth, Roman Zenka, John P George, Filippo Pinto E Vairo, Devin Oglesbee, Matthew J Schultz, Dietrich Matern, Akhilesh Pandey
Development of a Multiplexed Sphingolipids Method for Diagnosis of Inborn Errors of Ceramide Metabolism. Clinical chemistry (2024)
Dong-Gi Mun, Firdous A Bhat, Neha S Joshi, Leticia Sandoval, Husheng Ding, Anu Jain, Jane A Peterson, Taewook Kang, Ganesh P Pujari, Jennifer L Tomlinson, Rohit Budhraja, Roman M Zenka, Nagarajan Kannan, Benjamin R Kipp, Surendra Dasari, Alexandre Gaspar-Maia, Rory L Smoot, Richard Kumaran Kandasamy, Akhilesh Pandey
Diversity of post-translational modifications and cell signaling revealed by single cell and single organelle mass spectrometry. Communications biology 7 (1) (2024)
Jia Jia, Wenbo Ji, Antoine N Saliba, Clifford M Csizmar, Kaiqin Ye, Lei Hu, Kevin L Peterson, Paula A Schneider, X Wei Meng, Annapoorna Venkatachalam, Mirinal S Patnaik, Jonathan A Webster, B Douglas Smith, Gabriel Ghiaur, Xinyan Wu, Jun Zhong, Akhilesh Pandey, Karen S Flatten, Qingmei Deng, Hongzhi Wang, Scott H Kaufmann, Haiming Dai
AMPK inhibition sensitizes acute leukemia cells to BH3 mimetic-induced cell death. Cell death and differentiation 31 (4) (2024)
Rohit Budhraja, Neha Joshi, Silvia Radenkovic, Tamas Kozicz, Eva Morava, Akhilesh Pandey
Dysregulated proteome and N-glycoproteome in ALG1-deficient fibroblasts. Proteomics (2024)
Xiaofeng Xie, Thy Truong, Siqi Huang, S Madisyn Johnston, Simon Hovanski, Abigail Robinson, Kei G I Webber, Hsien-Jung L Lin, Dong-Gi Mun, Akhilesh Pandey, Ryan T Kelly
Multicolumn Nanoflow Liquid Chromatography with Accelerated Offline Gradient Generation for Robust and Sensitive Single-Cell Proteome Profiling. Analytical chemistry (2024)
Shruthi Vasanthaiah, Renu Verma, Ajay Kumar, Aravind K Bandari, John George, Mona Rastogi, Gowrang Kasaba Manjunath, Jyoti Sharma, Abhishek Kumar, Janavi Subramani, Kiran Chawla, Akhilesh Pandey
Culture-Free Whole Genome Sequencing of Mycobacterium tuberculosis Using Ligand-Mediated Bead Enrichment Method. Open forum infectious diseases 11 (7) (2024)
Jia Jia, Wenbo Ji, Antoine N Saliba, Clifford M Csizmar, Kaiqin Ye, Lei Hu, Kevin L Peterson, Paula A Schneider, X Wei Meng, Annapoorna Venkatachalam, Mirinal S Patnaik, Jonathan A Webster, B Douglas Smith, Gabriel Ghiaur, Xinyan Wu, Jun Zhong, Akhilesh Pandey, Karen S Flatten, Qingmei Deng, Hongzhi Wang, Scott H Kaufmann, Haiming Dai
AMPK inhibition sensitizes acute leukemia cells to BH3 mimetic-induced cell death. Cell death and differentiation (2024)
Sandhya Sukumaran, V G Vysakh, Wilson Sebastian, A Gopalakrishnan, Lalitha Hari Dharani, Akhilesh Pandey, Abhishek Kumar, J K Jena
The chromosome level genome assembly of the Asian green mussel, Perna viridis. Scientific data 11 (1) (2024)
Anikha Bellad, Kannan Rangiah, Gajanan Sathe, Gourav Dey, Pragalatha Kumar Appadorai, Hemalatha Lokanatha, Pradeep Rudra Murthy, Aruna Gowdra, Akhilesh Pandey
Identification of a rare [ G γ( A γδβ) 0 ] -thalassemia using tandem mass spectrometry. Proteomics 24 (14) (2024)
Nicholas D Sun, Allison R Carr, Erica N Krogman, Yogesh Chawla, Jun Zhong, Matthew C Guttormson, Mark Chan, Michelle A Hsu, Haidong Dong, Dusan Bogunovic, Akhilesh Pandey, Laura M Rogers, Adrian T Ting
TBK1 and IKKε protect target cells from IFNγ-mediated T cell killing via an inflammatory apoptotic mechanism. bioRxiv : the preprint server for biology (2024)
Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Michael J Hansen, Jun Zhong, Kenneth L Johnson, Roman Zenka, Akhilesh Pandey, Larry R Pease, Hu Zeng
PP2A catalytic subunit alpha is critically required for CD8 + T cell homeostasis and anti-bacterial responses. bioRxiv : the preprint server for biology (2024)
Dong-Gi Mun, Firdous A Bhat, Neha S Joshi, Leticia Sandoval, Husheng Ding, Anu Jain, Jane A Peterson, Taewook Kang, Ganesh P Pujari, Jennifer L Tomlinson, Rohit Budhraja, Roman M Zenka, Nagarajan Kannan, Benjamin R Kipp, Surendra Dasari, Alexandre Gaspar-Maia, Rory L Smoot, Richard Kumaran Kandasamy, Akhilesh Pandey
Diversity of post-translational modifications and cell signaling revealed by single cell and single organelle mass spectrometry. Communications biology 7 (1) (2024)
Rohit Budhraja, Neha Joshi, Silvia Radenkovic, Tamas Kozicz, Eva Morava, Akhilesh Pandey
Dysregulated proteome and N-glycoproteome in ALG1-deficient fibroblasts. Proteomics 24 (15) (2024)
Smrita Singh, K T Shreya Parthasarathi, Mohd Younis Bhat, Champaka Gopal, Jyoti Sharma, Akhilesh Pandey
Profiling Kinase Activities for Precision Oncology in Diffuse Gastric Cancer. Omics : a journal of integrative biology 28 (2) (2024)
Anikha Bellad, Kannan Rangiah, Gajanan Sathe, Gourav Dey, Pragalatha Kumar Appadorai, Hemalatha Lokanatha, Pradeep Rudra Murthy, Aruna Gowdra, Akhilesh Pandey
Identification of a rare [ G γ( A γδβ) 0 ] -thalassemia using tandem mass spectrometry. Proteomics (2024)
Kishore Garapati, Anu Jain, Benjamin J Madden, Dong-Gi Mun, Jyoti Sharma, Rohit Budhraja, Akhilesh Pandey
Defining albumin as a glycoprotein with multiple N-linked glycosylation sites. Journal of translational medicine 22 (1) (2024)
Jia Jia, Wenbo Ji, Antoine N Saliba, Clifford M Csizmar, Kaiqin Ye, Lei Hu, Kevin L Peterson, Paula A Schneider, X Wei Meng, Annapoorna Venkatachalam, Mirinal S Patnaik, Jonathan A Webster, B Douglas Smith, Gabriel Ghiaur, Xinyan Wu, Jun Zhong, Akhilesh Pandey, Karen S Flatten, Qingmei Deng, Hongzhi Wang, Scott H Kaufmann, Haiming Dai
AMPK inhibition sensitizes acute leukemia cells to BH3 mimetic-induced cell death. Cell death and differentiation 31 (4) (2024)
Rohit Budhraja, Neha Joshi, Silvia Radenkovic, Tamas Kozicz, Eva Morava, Akhilesh Pandey
Dysregulated proteome and N-glycoproteome in ALG1-deficient fibroblasts. Proteomics (2024)
Smrita Singh, K T Shreya Parthasarathi, Mohd Younis Bhat, Champaka Gopal, Jyoti Sharma, Akhilesh Pandey
Profiling Kinase Activities for Precision Oncology in Diffuse Gastric Cancer. Omics : a journal of integrative biology (2024)
Xiaofeng Xie, Thy Truong, Siqi Huang, S Madisyn Johnston, Simon Hovanski, Abigail Robinson, Kei G I Webber, Hsien-Jung L Lin, Dong-Gi Mun, Akhilesh Pandey, Ryan T Kelly
Multicolumn Nanoflow Liquid Chromatography with Accelerated Offline Gradient Generation for Robust and Sensitive Single-Cell Proteome Profiling. Analytical chemistry 96 (26) (2024)
Shruthi Vasanthaiah, Renu Verma, Ajay Kumar, Aravind K Bandari, John George, Mona Rastogi, Gowrang Kasaba Manjunath, Jyoti Sharma, Abhishek Kumar, Janavi Subramani, Kiran Chawla, Akhilesh Pandey
Culture-Free Whole Genome Sequencing of Mycobacterium tuberculosis Using Ligand-Mediated Bead Enrichment Method. Open forum infectious diseases 11 (7) (2024)
Kishore Garapati, Anu Jain, Benjamin J Madden, Dong-Gi Mun, Jyoti Sharma, Rohit Budhraja, Akhilesh Pandey
Defining albumin as a glycoprotein with multiple N-linked glycosylation sites. Journal of translational medicine 22 (1) (2024)
Nicholas D Sun, Allison R Carr, Erica N Krogman, Yogesh Chawla, Jun Zhong, Matthew C Guttormson, Mark Chan, Michelle A Hsu, Haidong Dong, Dusan Bogunovic, Akhilesh Pandey, Laura M Rogers, Adrian T Ting
TBK1 and IKKε protect target cells from IFNγ-mediated T cell killing via an inflammatory apoptotic mechanism. bioRxiv : the preprint server for biology (2024)
Rohit Budhraja, Neha Joshi, Silvia Radenkovic, Tamas Kozicz, Eva Morava, Akhilesh Pandey
Dysregulated proteome and N-glycoproteome in ALG1-deficient fibroblasts. Proteomics 24 (15) (2024)
Kiran K Mangalaparthi, Krishna Patel, Aafaque Ahmad Khan, Bipin Nair, Rekha V Kumar, Thottethodi Subrahmanya Keshava Prasad, David Sidransky, Aditi Chatterjee, Akhilesh Pandey, Harsha Gowda
Molecular Characterization of Esophageal Squamous Cell Carcinoma Using Quantitative Proteomics. Cancers 15 (13) (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/ PARK14 ). eLife 12 (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Bibo Zhu, Xiaoqin Wei, Harish Narasimhan, Wei Qian, Ruixuan Zhang, In Su Cheon, Yue Wu, Chaofan Li, Russell G Jones, Mark H Kaplan, Robert A Vassallo, Thomas J Braciale, Lindsay Somerville, Jerry R Colca, Akhilesh Pandey, Patrick E H Jackson, Barbara J Mann, Connie M Krawczyk, Jeffrey M Sturek, Jie Sun
Inhibition of the mitochondrial pyruvate carrier simultaneously mitigates hyperinflammation and hyperglycemia in COVID-19. Science immunology (2023)
Gordon Worley, Seul Kee Byeon, P Brian Smith, Sarah J Hart, Sarah P Young, Akhilesh Pandey, Priya S Kishnani
An exploratory study of plasma ceramides in comorbidities in Down syndrome. American journal of medical genetics. Part A (2023)
Jae Hun Jung, Da-Qing Yang, Hongming Song, Xiangyu Wang, Xinyan Wu, Kwang Pyo Kim, Akhilesh Pandey, Seul Kee Byeon
Characterization of Lipid Alterations by Oncogenic PIK3CA Mutations Using Untargeted Lipidomics in Breast Cancer. Omics : a journal of integrative biology 27 (7) (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Mithila Sawant, Audrey Wilson, Dhivya Sridaran, Kiran Mahajan, Christopher J O'Conor, Ian S Hagemann, Jingqin R Luo, Cody Weimholt, Tiandao Li, Juan Carlos Roa, Akhilesh Pandey, Xinyan Wu, Nupam P Mahajan
Epigenetic reprogramming of cell cycle genes by ACK1 promotes breast cancer resistance to CDK4/6 inhibitor. Oncogene (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/PARK14). eLife 12 (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Harshit Khurana, Babylakshmi Muthusamy, Uday Yanamandra, Kishore Garapati, Harikrishnan Premdeep, Shankar Subramanian, Akhilesh Pandey
Whole Exome Sequencing Reveals Novel Variants in Unexplained Erythrocytosis. Omics : a journal of integrative biology (2023)
Bibo Zhu, Xiaoqin Wei, Harish Narasimhan, Wei Qian, Ruixuan Zhang, In Su Cheon, Yue Wu, Chaofan Li, Russell G Jones, Mark H Kaplan, Robert A Vassallo, Thomas J Braciale, Lindsay Somerville, Jerry R Colca, Akhilesh Pandey, Patrick E H Jackson, Barbara J Mann, Connie M Krawczyk, Jeffrey M Sturek, Jie Sun
Inhibition of the mitochondrial pyruvate carrier simultaneously mitigates hyperinflammation and hyperglycemia in COVID-19. Science immunology (2023)
Anna N Ligezka, Rohit Budhraja, Yurika Nishiyama, Fabienne C Fiesel, Graeme Preston, Andrew Edmondson, Wasantha Ranatunga, Johan L K Van Hove, Jens O Watzlawik, Wolfdieter Springer, Akhilesh Pandey, Eva Morava, Tamas Kozicz
Interplay of Impaired Cellular Bioenergetics and Autophagy in PMM2-CDG. Genes 14 (8) (2023)
Debdeep Dutta, Oguz Kanca, Seul Kee Byeon, Paul C Marcogliese, Zhongyuan Zuo, Rishi V Shridharan, Jun Hyoung Park, null null, Guang Lin, Ming Ge, Gali Heimer, Jennefer N Carter, Matthew T Wheeler, Benny Abraham Kaipparettu, Akhilesh Pandey, Hugo J Bellen
A defect in mitochondrial fatty acid synthesis impairs iron metabolism and causes elevated ceramide levels. Nature metabolism (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/PARK14). eLife 12 (2023)
Neha Joshi, Firdous Bhat, Anikha Bellad, Gajanan Sathe, Anu Jain, Sandip Chavan, Ravi Sirdeshmukh, Akhilesh Pandey
Urinary Proteomics for Discovery of Gastric Cancer Biomarkers to Enable Precision Clinical Oncology. Omics : a journal of integrative biology (2023)
Cody R Fisher, Akhilesh Pandey, Kerryl E Greenwood-Quaintance, Matthew P Abdel, Akhilesh Pandey, Robin Patel
Mass Spectrometry-Based Proteomic Profiling of Sonicate Fluid Differentiates Staphylococcus aureus Periprosthetic Joint Infection from Non-Infectious Failure: A pilot study. Proteomics. Clinical applications (2023)
Dong-Gi Mun, Rohit Budhraja, Firdous A Bhat, Roman M Zenka, Kenneth L Johnson, Abhay Moghekar, Akhilesh Pandey
Four-dimensional proteomics analysis of human cerebrospinal fluid with trapped ion mobility spectrometry using PASEF. Proteomics (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Nikolaos A Papanikolaou, Marios Nikolaidis, Grigorios D Amoutzias, Ariadni Fouza, Maria A Papaioannou, Akhilesh Pandey, Donatella Delle Cave
The Dynamic and Crucial Role of the Arginine Methylproteome in Myoblast Cell Differentiation. International journal of molecular sciences 24 (3) (2023)
Krishna Patel, Arunagiri Kuha Deva Magendhra Rao, Shirley Sunder Singh, Sridevi Velusami, Thangarajan Rajkumar, Bipin Nair, Akhilesh Pandey, Aditi Chatterjee, Samson Mani, Harsha Gowda
MicroRNA Expression Profile in Early-Stage Breast Cancers. MicroRNA (Shariqah, United Arab Emirates) (2023)
Ganesh P Pujari, Kiran K Mangalaparthi, Benjamin J Madden, Firdous A Bhat, M Cristine Charlesworth, Amy J French, Gunveen Sachdeva, Eugenio Daviso, Ulrich Thomann, Patrick McCarthy, Sameer Vasantgadkar, Debadeep Bhattacharyya, Akhilesh Pandey
A High-Throughput Workflow for FFPE Tissue Proteomics. Journal of the American Society for Mass Spectrometry (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Dong-Gi Mun, Firdous A Bhat, Husheng Ding, Benjamin J Madden, Sekar Natesampillai, Andrew D Badley, Kenneth L Johnson, Ryan T Kelly, Akhilesh Pandey
Optimizing single cell proteomics using trapped ion mobility spectrometry for label-free experiments. The Analyst (2023)
Swaathi Jayaraman, Xinyan Wu, Krishna R Kalari, Xiaojia Tang, Mary J Kuffel, Elizabeth S Bruinsma, Shahrzad Jalali, Kevin L Peterson, Cristina Correia, Rachel A Kudgus, Scott H Kaufmann, Santosh Renuse, James N Ingle, Joel M Reid, Matthew M Ames, Alan P Fields, Matthew J Schellenberg, John R Hawse, Akhilesh Pandey, Matthew P Goetz
Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer. NPJ breast cancer 9 (1) (2023)
Nikolaos A Papanikolaou, Marios Nikolaidis, Grigorios D Amoutzias, Ariadni Fouza, Maria A Papaioannou, Akhilesh Pandey, Donatella Delle Cave
The Dynamic and Crucial Role of the Arginine Methylproteome in Myoblast Cell Differentiation. International journal of molecular sciences 24 (3) (2023)
Nikolaos A Papanikolaou, Marios Nikolaidis, Grigorios D Amoutzias, Ariadni Fouza, Maria A Papaioannou, Akhilesh Pandey, Donatella Delle Cave
The Dynamic and Crucial Role of the Arginine Methylproteome in Myoblast Cell Differentiation. International journal of molecular sciences 24 (3) (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/ PARK14 ). eLife 12 (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/PARK14). eLife 12 (2023)
Guang Lin, Burak Tepe, Geoff McGrane, Regine C Tipon, Gist Croft, Leena Panwala, Amanda Hope, Agnes J H Liang, Zhongyuan Zuo, Seul Kee Byeon, Lily Wang, Akhilesh Pandey, Hugo J Bellen
Exploring therapeutic strategies for infantile neuronal axonal dystrophy (INAD/PARK14). eLife 12 (2023)
Kiran K Mangalaparthi, Smrita Singh, Kishore Garapati, Joaquin J Garcia, Benjamin R Kipp, Anja C Roden, Akhilesh Pandey
Identification of SARS-CoV-2 from Human Lung Formalin-Fixed Paraffin-Embedded Tissue Sections Using Mass Spectrometry. Omics : a journal of integrative biology (2023)
Dong-Gi Mun, Neha S Joshi, Rohit Budhraja, Gunveen S Sachdeva, Taewook Kang, Firdous A Bhat, Husheng Ding, Benjamin J Madden, Jun Zhong, Akhilesh Pandey
Automated Sample Preparation Workflow for Tandem Mass Tag-Based Proteomics. Journal of the American Society for Mass Spectrometry (2023)
Santosh Renuse, Linda M Benson, Patrick M Vanderboom, F N U Ruchi, Yogesh R Yadav, Kenneth L Johnson, Benjamin C Brown, Jane A Peterson, Rita Basu, Daniel J McCormick, Akhilesh Pandey, Ananda Basu
13 C 15 N: glucagon-based novel isotope dilution mass spectrometry method for measurement of glucagon metabolism in humans. Clinical proteomics 19 (1) (2022)
Patrick M Vanderboom, Santosh Renuse, Anthony D Maus, Anil K Madugundu, Jennifer V Kemp, Kari M Gurtner, Ravinder J Singh, Stefan K Grebe, Akhilesh Pandey, Surendra Dasari
Machine Learning-Based Fragment Selection Improves the Performance of Qualitative PRM Assays. Journal of proteome research 21 (8) (2022)
Liping Wang, Guang Lin, Zhongyuan Zuo, Yarong Li, Seul Kee Byeon, Akhilesh Pandey, Hugo J Bellen
Neuronal activity induces glucosylceramide that is secreted via exosomes for lysosomal degradation in glia. Science advances 8 (28) (2022)
Mayank Saraswat, Kishore Garapati, Jinyong Kim, Rohit Budhraja, Akhilesh Pandey
Proteomic alterations in extracellular vesicles induced by oncogenic PIK3CA mutations. Proteomics 22 (19-20) (2022)
Nupur S Munjal, Dikscha Sapra, K T Shreya Parthasarathi, Abhishek Goyal, Akhilesh Pandey, Manidipa Banerjee, Jyoti Sharma
Deciphering the Interactions of SARS-CoV-2 Proteins with Human Ion Channels Using Machine-Learning-Based Methods. Pathogens (Basel, Switzerland) 11 (2) (2022)
Mayank Saraswat, Kiran Kumar Mangalaparthi, Kishore Garapati, Akhilesh Pandey
TMT-Based Multiplexed Quantitation of N -Glycopeptides Reveals Glycoproteome Remodeling Induced by Oncogenic Mutations. ACS omega 7 (13) (2022)
Madan Gopal Ramarajan, Mayank Saraswat, Rohit Budhraja, Kishore Garapati, Kimiyo Raymond, Akhilesh Pandey
Mass spectrometric analysis of chondroitin sulfate-linked peptides. Journal of proteins and proteomics 13 (4) (2022)
Kiran K Mangalaparthi, Sandip Chavan, Anil K Madugundu, Santosh Renuse, Patrick M Vanderboom, Anthony D Maus, Jennifer Kemp, Benjamin R Kipp, Stefan K Grebe, Ravinder J Singh, Akhilesh Pandey
Correction: A SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples. Clinical proteomics 19 (1) (2022)
K T Shreya Parthasarathi, Susmita Mandal, Smrita Singh, Seetaramanjaneyulu Gundimeda, Mohit Kumar Jolly, Akhilesh Pandey, Jyoti Sharma
In Silico Analysis of Ion Channels and Their Correlation with Epithelial to Mesenchymal Transition in Breast Cancer. Cancers 14 (6) (2022)
Raymond Liang, Vijay Menon, Jiajing Qiu, Tasleem Arif, Santosh Renuse, Miao Lin, Roberta Nowak, Boris M Hartmann, Nikolaos Tzavaras, Deanna L Benson, Jerry Edward Chipuk, Miguel Fribourg, Akhilesh Pandey, Velia M Fowler, Saghi Ghaffari
Mitochondrial localization and moderated activity are key to murine erythroid enucleation. Blood advances 5 (10) (2021)
Mayank Saraswat, Kishore Garapati, Dong-Gi Mun, Akhilesh Pandey
Extensive heterogeneity of glycopeptides in plasma revealed by deep glycoproteomic analysis using size-exclusion chromatography. Molecular omics 17 (6) (2021)
Sandip Chavan, Kiran K Mangalaparthi, Smrita Singh, Santosh Renuse, Patrick M Vanderboom, Anil Kumar Madugundu, Rohit Budhraja, Kathrine McAulay, Thomas E Grys, Andrew D Rule, Mariam P Alexander, John C O'Horo, Andrew D Badley, Akhilesh Pandey
Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response. Journal of proteome research 20 (7) (2021)
Santosh Renuse, Vijay Sagar Madamsetty, Dong-Gi Mun, Anil K Madugundu, Smrita Singh, Savita Udainiya, Kiran K Mangalaparthi, Min-Sik Kim, Ren Liu, S Ram Kumar, Valery Krasnoperov, Mark Truty, Rondell P Graham, Parkash S Gill, Debabrata Mukhopadhyay, Akhilesh Pandey
Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer. Cancers 13 (14) (2021)
Raiha Tahir, Anil K Madugundu, Savita Udainiya, Jevon A Cutler, Santosh Renuse, Li Wang, Nicole A Pearson, Christopher J Mitchell, Nupam Mahajan, Akhilesh Pandey, Xinyan Wu
Proximity-Dependent Biotinylation to Elucidate the Interactome of TNK2 Nonreceptor Tyrosine Kinase. Journal of proteome research 20 (9) (2021)
Daniel J Rowan, Kiran K Mangalaparthi, Smrita Singh, Roger K Moreira, Taofic Mounajjed, Laura Lamps, Maria Westerhoff, Jerome Cheng, Andrew M Bellizzi, Daniela S Allende, Akhilesh Pandey, Rondell P Graham
Metallothionein immunohistochemistry has high sensitivity and specificity for detection of Wilson disease. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 35 (7) (2021)
Seul Kee Byeon, Rasheda Khanam, Sayedur Rahman, Tarik Hasan, Syed Jafar Raza Rizvi, Akhilesh Pandey, Madan Gopal Ramarajan, Jae Hun Jung, Nabidul Haque Chowdhury, Salahuddin Ahmed, Rubhana Raqib, Kwang-Pyo Kim, Amy L Piazza, Piero Rinaldo, Akhilesh Pandey, Abdullah H Baqui, null Amanhi Bio-Banking Study Group
Maternal serum lipidomics identifies lysophosphatidic acid as a predictor of small for gestational age neonates. Molecular omics 17 (6) (2021)
Kiran K Mangalaparthi, Anil K Madugundu, Zachary C Ryan, Kishore Garapati, Jane A Peterson, Gourav Dey, Amol Prakash, Akhilesh Pandey
Digging deeper into the immunopeptidome: characterization of post-translationally modified peptides presented by MHC I. Journal of proteins and proteomics 12 (3) (2021)
Smrita Singh, Mohd Younis Bhat, Gajanan Sathe, Champaka Gopal, Jyoti Sharma, Akhilesh Pandey, Neha S Joshi, Akhilesh Pandey
Proteomic Signatures of Diffuse and Intestinal Subtypes of Gastric Cancer. Cancers 13 (23) (2021)
Shi-Xun Ma, Bo Am Seo, Donghoon Kim, Yulan Xiong, Seung-Hwan Kwon, Saurav Brahmachari, Sangjune Kim, Tae-In Kam, Raja Sekhar Nirujogi, Sang Ho Kwon, Valina L Dawson, Ted M Dawson, Akhilesh Pandey, Chan Hyun Na, Han Seok Ko
Complement and Coagulation Cascades are Potentially Involved in Dopaminergic Neurodegeneration in α-Synuclein-Based Mouse Models of Parkinson's Disease. Journal of proteome research 20 (7) (2021)
Amol Prakash, Lorne Taylor, Manu Varkey, Nate Hoxie, Yassene Mohammed, Young Ah Goo, Scott Peterman, Abhay Moghekar, Yuting Yuan, Trevor Glaros, Joel Ricky Steele, Pouya Faridi, Shashwati Parihari, Sanjeeva Srivastava, Joseph J Otto, Julius O Nyalwidhe, Oliver John Semmes, Michael F Moran, Akhilesh Pandey, Dong Gi Mun, Akhilesh Pandey, Keira E Mahoney, Jeffrey Shabanowitz, Satya Saxena, Benjamin C Orsburn
Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants. Cancers 13 (20) (2021)
Kiran K Mangalaparthi, Anil K Madugundu, Zachary C Ryan, Kishore Garapati, Jane A Peterson, Gourav Dey, Amol Prakash, Akhilesh Pandey
Digging deeper into the immunopeptidome: characterization of post-translationally modified peptides presented by MHC I. Journal of proteins and proteomics 12 (3) (2021)
Anthony D Maus, Santosh Renuse, Jennifer Kemp, Anil K Madugundu, Patrick M Vanderboom, Joseph Blommel, Calvin Jerde, Surendra Dasari, Benjamin R Kipp, Ravinder J Singh, Stefan K Grebe, Akhilesh Pandey
Targeted Detection of SARS-CoV-2 Nucleocapsid Sequence Variants by Mass Spectrometric Analysis of Tryptic Peptides. Journal of proteome research (2021)
Dong-Gi Mun, Patrick M Vanderboom, Anil K Madugundu, Kishore Garapati, Sandip Chavan, Jane A Peterson, Mayank Saraswat, Akhilesh Pandey
DIA-Based Proteome Profiling of Nasopharyngeal Swabs from COVID-19 Patients. Journal of proteome research 20 (8) (2021)
Kiran K Mangalaparthi, Sandip Chavan, Anil K Madugundu, Santosh Renuse, Patrick M Vanderboom, Anthony D Maus, Jennifer Kemp, Benjamin R Kipp, Stefan K Grebe, Ravinder J Singh, Akhilesh Pandey
A SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples. Clinical proteomics 18 (1) (2021)
Xinyan Wu, Li Wang, Nicole A Pearson, Santosh Renuse, Ran Cheng, Ye Liang, Dong-Gi Mun, Akhilesh Pandey, Yaoyu Xu, Parkash S Gill, Akhilesh Pandey
Quantitative Tyrosine Phosphoproteome Profiling of AXL Receptor Tyrosine Kinase Signaling Network. Cancers 13 (16) (2021)
Santosh Renuse, Anil K Madugundu, Jae Hun Jung, Seul Kee Byeon, Hana L Goldschmidt, Raiha Tahir, David Meyers, Dae In Kim, Jevon Cutler, Kwang-Pyo Kim, Xinyan Wu, Richard L Huganir, Akhilesh Pandey
Signature Fragment Ions of Biotinylated Peptides. Journal of the American Society for Mass Spectrometry 31 (2) (2020)
Akhilesh Pandey, Eric W Stawiski, Steffen Durinck, Harsha Gowda, Leonard D Goldstein, Mustafa A Barbhuiya, Markus S Schröder, Sreelakshmi K Sreenivasamurthy, Sun-Whe Kim, Sameer Phalke, Kushal Suryamohan, Kayla Lee, Papia Chakraborty, Vasumathi Kode, Xiaoshan Shi, Aditi Chatterjee, Keshava Datta, Aafaque A Khan, Tejaswini Subbannayya, Jing Wang, Subhra Chaudhuri, Sanjiv Gupta, Braj Raj Shrivastav, Bijay S Jaiswal, Satish S Poojary, Shushruta Bhunia, Patricia Garcia, Carolina Bizama, Lorena Rosa, Wooil Kwon, Hyeong Seok Kim, Youngmin Han, Thakur Deen Yadav, Vedam L Ramprasad, Amitabha Chaudhuri, Zora Modrusan, Juan Carlos Roa, Pramod Kumar Tiwari, Jin-Young Jang, Somasekar Seshagiri
Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate. Nature communications 11 (1) (2020)

Akhilesh Pandey.css-eqlu8i{font-size:small;padding-left:4px;} (Kiran K Mangalaparthi)

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Akhilesh Pandey (Kiran K Mangalaparthi)