Alex C Soupir (Alex Soupir)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 18

Top Topics

African American

Prostate Cancer

Top Venues

medRxiv : the preprint server for health sciences

bioRxiv : the preprint server for biology

International journal of molecular sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Oscar E Ospina, Roberto Manjarres-Betancur, Guillermo Gonzalez-Calderon, Alex C Soupir, Inna Smalley, Kenneth Y Tsai, Joseph Markowitz, Ethan J Vallebuona, Anders E Berglund, Steven A Eschrich, Xiaoqing Yu, Brooke L Fridley
spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis. bioRxiv : the preprint server for biology (2024)
Alex C Soupir, Mary K Townsend, Cassandra A Hathaway, Jonathan V Nguyen, Carlos Moran Segura, Daryoush Saeed-Vafa, Oscar E Ospina, Lauren C Peres, Jose R Conejo-Garcia, Kathryn L Terry, Shelley S Tworoger, Brooke L Fridley
WITHDRAWN: Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer. medRxiv : the preprint server for health sciences (2024)
Alex C Soupir, Mary K Townsend, Cassandra A Hathaway, Jonathan V Nguyen, Carlos Moran Segura, Daryoush Saeed-Vafa, Oscar E Ospina, Lauren C Peres, Jose R Conejo-Garcia, Kathryn L Terry, Shelley S Tworoger, Brooke L Fridley
Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer. medRxiv : the preprint server for health sciences (2024)
Alex C Soupir, Mary K Townsend, Cassandra A Hathaway, Jonathan V Nguyen, Carlos Moran Segura, Daryoush Saeed-Vafa, Oscar E Ospina, Lauren C Peres, Jose R Conejo-Garcia, Kathryn L Terry, Shelley S Tworoger, Brooke L Fridley
Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer. medRxiv : the preprint server for health sciences (2024)
Alex C Soupir, Mary K Townsend, Cassandra A Hathaway, Jonathan V Nguyen, Carlos Moran Segura, Daryoush Saeed-Vafa, Oscar E Ospina, Lauren C Peres, Jose R Conejo-Garcia, Kathryn L Terry, Shelley S Tworoger, Brooke L Fridley
WITHDRAWN: Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer. medRxiv : the preprint server for health sciences (2024)
Oscar E Ospina, Roberto Manjarres-Betancur, Guillermo Gonzalez-Calderon, Alex C Soupir, Inna Smalley, Kenneth Y Tsai, Joseph Markowitz, Ethan J Vallebuona, Anders E Berglund, Steven A Eschrich, Xiaoqing Yu, Brooke L Fridley
spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis. bioRxiv : the preprint server for biology (2024)
Alex C Soupir, Mary K Townsend, Cassandra A Hathaway, Jonathan V Nguyen, Carlos Moran Segura, Daryoush Saeed-Vafa, Oscar E Ospina, Lauren C Peres, Jose R Conejo-Garcia, Kathryn L Terry, Shelley S Tworoger, Brooke L Fridley
WITHDRAWN: Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer. medRxiv : the preprint server for health sciences (2024)
Alex C Soupir, Yijun Tian, Paul Allen Stewart, Yury Nunez Lopez, Brandon J Manley, Bruna Pellini, Amanda M Bloomer, Jingsong Zhang, Qianxing Mo, Douglas C Marchion, Min Liu, John M Koomen, Erin M Siegel, Liang Wang
Detectable Lipidomes and Metabolomes by Different Plasma Exosome Isolation Methods in Healthy Controls and Patients with Advanced Prostate and Lung Cancer. International journal of molecular sciences 24 (3) (2023)
Teemu Daniel Laajala, Varsha Sreekanth, Alex C Soupir, Jordan Creed, Federico C F Calboli, Kalaimathy Singaravelu, Michael V Orman, Christelle M Colin-Leitzinger, Travis A Gerke, Brooke L Fidley, Svitlana Tyekucheva, James C Costello
curatedPCaData: Integration of clinical, genomic, and signature features in a curated and harmonized prostate cancer data resource. bioRxiv : the preprint server for biology (2023)
Alex C Soupir, Yijun Tian, Paul Allen Stewart, Yury Nunez Lopez, Brandon J Manley, Bruna Pellini, Amanda M Bloomer, Jingsong Zhang, Qianxing Mo, Douglas C Marchion, Min Liu, John M Koomen, Erin M Siegel, Liang Wang
Detectable Lipidomes and Metabolomes by Different Plasma Exosome Isolation Methods in Healthy Controls and Patients with Advanced Prostate and Lung Cancer. International journal of molecular sciences 24 (3) (2023)
Alex C Soupir, Yijun Tian, Paul Allen Stewart, Yury Nunez Lopez, Brandon J Manley, Bruna Pellini, Amanda M Bloomer, Jingsong Zhang, Qianxing Mo, Douglas C Marchion, Min Liu, John M Koomen, Erin M Siegel, Liang Wang
Detectable Lipidomes and Metabolomes by Different Plasma Exosome Isolation Methods in Healthy Controls and Patients with Advanced Prostate and Lung Cancer. International journal of molecular sciences 24 (3) (2023)
Teemu Daniel Laajala, Varsha Sreekanth, Alex C Soupir, Jordan Creed, Federico C F Calboli, Kalaimathy Singaravelu, Michael V Orman, Christelle M Colin-Leitzinger, Travis A Gerke, Brooke L Fidley, Svitlana Tyekucheva, James C Costello
curatedPCaData: Integration of clinical, genomic, and signature features in a curated and harmonized prostate cancer data resource. bioRxiv : the preprint server for biology (2023)
Alex C Soupir, Mitchell T Hayes, Taylor C Peak, Oscar E Ospina, Nicholas H Chakiryan, Anders E Berglund, Paul A Stewart, Jonathan V Nguyen, Carlos Moran Segura, Natasha L Francis, Paola M Ramos Echevarria, Jad Chahoud, Roger Li, Kenneth Y Tsai, Jodi A Balasi, Yamila Caraballo Peres, Jasreman Dhillon, Lindsey A Martinez, Warren E Gloria, Nathan Schurman, Sean Kim, Mark Gregory, James J Mule, Brooke L Fridley, Brandon J Manley
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment. bioRxiv : the preprint server for biology (2023)
Teemu Daniel Laajala, Varsha Sreekanth, Alex C Soupir, Jordan H Creed, Anni S Halkola, Federico C F Calboli, Kalaimathy Singaravelu, Michael V Orman, Christelle M Colin-Leitzinger, Travis Gerke, Brooke L Fridley, Svitlana Tyekucheva, James C Costello
A harmonized resource of integrated prostate cancer clinical, -omic, and signature features. Scientific data 10 (1) (2023)
Jinyong Huang, Meijun Du, Alex C Soupir, Liewei Wang, Winston Tan, Krishna R Kalari, Deepak Kilari, Jong Y Park, Chiang-Ching Huang, Manish Kohli, Liang Wang
Plasma Copy Number Alteration-Based Prognostic and Predictive Multi-Gene Risk Score in Metastatic Castration-Resistant Prostate Cancer. Cancers 14 (19) (2022)
Christopher M Wilson, Alex C Soupir, Ram Thapa, Jordan Creed, Jonathan V Nguyen, Carlos Moran Segura, Travis A Gerke, Joellen M Schildkraut, Lauren C Peres, Brooke L Fridley
Tumor immune cell clustering and its association with survival in African American women with ovarian cancer. PLoS computational biology 18 (3) (2022)
Jinyong Huang, Alex C Soupir, Brian D Schlick, Mingxiang Teng, Ibrahim H Sahin, Jennifer B Permuth, Erin M Siegel, Brandon J Manley, Bruna Pellini, Liang Wang
Cancer Detection and Classification by CpG Island Hypermethylation Signatures in Plasma Cell-Free DNA. Cancers 13 (22) (2021)
Jinyong Huang, Alex C Soupir, Liang Wang
Cell-free DNA methylome profiling by MBD-seq with ultra-low input. Epigenetics (2021)