Alexander Stark

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Venues

The EMBO journal

Nature

Nature methods

Nature communications

Research Institute of Molecular Pathology (IMP)

European Molecular Biology Laboratory (EMBL) (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Research Institute of Molecular Pathology (IMP)

Austria

Senior Scientist

Research Institute of Molecular Pathology (IMP)

Austria

Group Leader

Broad Institute of MIT & Harvard and CSAIL MIT

United States

Postdoc

European Molecular Biology Laboratory (EMBL)

Germany

Bridging Postdoc

Education History

European Molecular Biology Laboratory (EMBL)

Germany

PHD

Publications

Filip Nemčko, Moritz Himmelsbach, Vincent Loubiere, Ramesh Yelagandula, Michaela Pagani, Nina Fasching, Julius Brennecke, Ulrich Elling, Alexander Stark, Stefan L Ameres
Proteome-scale tagging and functional screening in mammalian cells by ORFtag. Nature methods (2024)
Leonid Serebreni, Lisa-Marie Pleyer, Vanja Haberle, Oliver Hendy, Anna Vlasova, Vincent Loubiere, Filip Nemčko, Katharina Bergauer, Elisabeth Roitinger, Karl Mechtler, Alexander Stark
Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns. The EMBO journal (2023)
Jelle Jacobs, Michaela Pagani, Christoph Wenzl, Alexander Stark
Widespread regulatory specificities between transcriptional co-repressors and enhancers in Drosophila . Science (New York, N.Y.) 381 (6654) (2023)
Franziska Reiter, Bernardo P de Almeida, Alexander Stark
Enhancers display constrained sequence flexibility and context-specific modulation of motif function. Genome research (2023)
Bernardo P de Almeida, Christoph Schaub, Michaela Pagani, Stefano Secchia, Eileen E M Furlong, Alexander Stark
Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo. Nature (2023)
Christoph Neumayr, Vanja Haberle, Leonid Serebreni, Katharina Karner, Oliver Hendy, Ann Boija, Jonathan E Henninger, Charles H Li, Karel Stejskal, Gen Lin, Katharina Bergauer, Michaela Pagani, Martina Rath, Karl Mechtler, Cosmas D Arnold, Alexander Stark
Differential cofactor dependencies define distinct types of human enhancers. Nature 606 (7913) (2022)
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
Systematic identification and characterization of repressive domains in Drosophila transcription factors. The EMBO journal 42 (3) (2022)
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
Systematic identification and characterization of repressive domains in Drosophila transcription factors. The EMBO journal 42 (3) (2022)
Bernardo P de Almeida, Franziska Reiter, Michaela Pagani, Alexander Stark
DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers. Nature genetics 54 (5) (2022)
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
Systematic identification and characterization of repressive domains in Drosophila transcription factors. The EMBO journal 42 (3) (2022)
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
Systematic identification and characterization of repressive domains in Drosophila transcription factors. The EMBO journal 42 (3) (2022)
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
Systematic identification and characterization of repressive domains in Drosophila transcription factors. The EMBO journal (2022)
Lisa-Marie Appel, Vedran Franke, Melania Bruno, Irina Grishkovskaya, Aiste Kasiliauskaite, Tanja Kaufmann, Ursula E Schoeberl, Martin G Puchinger, Sebastian Kostrhon, Carmen Ebenwaldner, Marek Sebesta, Etienne Beltzung, Karl Mechtler, Gen Lin, Anna Vlasova, Martin Leeb, Rushad Pavri, Alexander Stark, Altuna Akalin, Richard Stefl, Carrie Bernecky, Kristina Djinovic-Carugo, Dea Slade
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature communications 12 (1) (2021)
Ramesh Yelagandula, Aleksandr Bykov, Alexander Vogt, Robert Heinen, Ezgi Özkan, Marcus Martin Strobl, Juliane Christina Baar, Kristina Uzunova, Bence Hajdusits, Darja Kordic, Erna Suljic, Amina Kurtovic-Kozaric, Sebija Izetbegovic, Justine Schaeffer, Peter Hufnagl, Alexander Zoufaly, Tamara Seitz, null null, Manuela Födinger, Franz Allerberger, Alexander Stark, Luisa Cochella, Ulrich Elling
Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq. Nature communications 12 (1) (2021)
Vanja Haberle, Alexander Stark
Eukaryotic core promoters and the functional basis of transcription initiation. Nature reviews. Molecular cell biology 19 (10) (2019)
Cosmas D Arnold, Filip Nemčko, Ashley R Woodfin, Sebastian Wienerroither, Anna Vlasova, Alexander Schleiffer, Michaela Pagani, Martina Rath, Alexander Stark
A high-throughput method to identify trans-activation domains within transcription factor sequences. The EMBO journal 37 (16) (2018)
Felix Muerdter, Łukasz M Boryń, Ashley R Woodfin, Christoph Neumayr, Martina Rath, Muhammad A Zabidi, Michaela Pagani, Vanja Haberle, Tomáš Kazmar, Rui R Catarino, Katharina Schernhuber, Cosmas D Arnold, Alexander Stark
Resolving systematic errors in widely used enhancer activity assays in human cells. Nature methods 15 (2) (2017)

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Publication Activity (10 Years)

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Alexander Stark